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Phylogenetic and Phylogenomic Definition of Rhizopus Species
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JGI Portals
… of microbial communities based on their metagenome sequence, in the context of reference isolate genomes … of fungi. Mycocosm enables users to navigate across sequenced fungal genomes, and to conduct comparative and … resource hub that provides access to publicly available sequenced algal genomes and genome annotations generated by …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, …
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DNA Synthesis Program
… Program aims to generate large datasets to explore sequence-function relationships, advancing the discovery of … Science Group supports researchers exploring how to convert sequence into functional assessments. The team has a … of fungi. Mycocosm enables users to navigate across sequenced fungal genomes, and to conduct comparative and …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Proposals aim to sequence and annotate genomes from Antarctica to Africa to … of France’s Institut de Biologie. His team proposed to sequence  Chaetoceros microalgae, or diatoms. Through the … provide more information on these ecologically relevant species. Another focus area was inter-organismal …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden understanding of the terpene synthase gene … revealed the largest number of TPS genes of any currently sequenced plant, a number closely followed by E. globulus . … list of putative genes from C. citriodora to known TPS gene sequences from Eucalyptus species and other plants. The …
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Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… crop varieties grow best in certain regions. Most plant species have adapted to their local environments; for … (Berkeley Lab), has produced a high-quality reference sequence of the complex switchgrass  genome using samples … many parts of the country also helped the team understand why some switchgrass plants from the Northeast have traits …
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The More the Merrier: Making the Case for Plant Pan-genomes
… in the laboratory. “We are fortunate because the progenitor species of  Brachypodium hybridum are still extant (whereas … genomically the whole complex of progenitors and descendant species and, consequently, the evolution of polyploidy.” … A pan-genome is the nonredundant set of genes found in a species, but in this case, the team included two species in …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… Initiative. Brassicales is represented by more than 4,700 species, and the proposal focuses on investigating the … to as natural products, the proposal includes plans to sequence several thousand Actinobacteria strains and then … through photosynthesis, but only a fraction have been sequenced.  Adriana Lopes dos Santos from Singapore’s …
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Phylogenomics and genetic analysis of solvent-producing Clostridium species
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Mapping Heat Resistance in Yeasts
… yeast Saccharomyces cerevisiae , allowing this species to grow better than its closest relative S. … then used a series of random insertions of a foreign DNA sequence to generate a huge pool of mutants, each containing … died and others grew well; the survivors had their DNA sequenced at the JGI as part of a 2014 Community Science …
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