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Plant-Microbial Interactions Group
… multipartite phenomenon in additional plant and bacterial species of bioenergy importance. … We are using cutting-edge …
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The More the Merrier: Making the Case for Plant Pan-genomes
… in the laboratory. “We are fortunate because the progenitor species of  Brachypodium hybridum are still extant (whereas … genomically the whole complex of progenitors and descendant species and, consequently, the evolution of polyploidy.” … A pan-genome is the nonredundant set of genes found in a species, but in this case, the team included two species in …
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Partnerships Development Team
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of letters … of all the other letters of the alphabet. Yet the specific sequence of these four letters represents an organism’s … the binding location for most transcription factors in a species,” O’Malley said. “It’s a unique capability; no one …
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Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds
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Phylogenomics and genetic analysis of solvent-producing Clostridium species
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, algae, …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
National Laboratory (Berkeley Lab), generated genome sequences for nearly 600 green millet plants and released a very high quality reference S. viridis genome sequence. Analysis of these plant genome sequences also led … Kellogg added, and shattering genes may be specific to species or groups of species.  The genome data also revealed …
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Natural Prodcast Episode 14: Nigel Mouncey
… to some people more about down the road. Email Nigel! He’ll sequence whatever you want!  [LAUGHTER]  NIGEL MOUNCEY: We …
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Understanding Wildfire Recovery, Starting in Soil
… which microbes in the soil persist after a wildfire — and why they thrive — gives forest managers more avenues to … harbored fungal genomes, including a novel Leotiomycetes species and Coniochaeata lignaria , and both DNA and RNA … builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful snapshot of what soils …
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The Case for Conservation
… with a complex genome . Now, high-quality reference genome sequences of the male and female plants, each representing a … comes from finally having an answer to the question, “Why bother keeping this?” For Stuart McDaniel’s lab at the … Pangea. McDaniel’s lab continues to work on the enigma of why the ancient moss sex chromosomes continue to evolve so …
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Genome sequence of Phaeobacter inhibens type strain (T5T), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens
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