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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, algae, …
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Natural Prodcast Episode 14: Nigel Mouncey
… to some people more about down the road. Email Nigel! He’ll sequence whatever you want!  [LAUGHTER]  NIGEL MOUNCEY: We …
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The Case for Conservation
… with a complex genome . Now, high-quality reference genome sequences of the male and female plants, each representing a … comes from finally having an answer to the question, “Why bother keeping this?” For Stuart McDaniel’s lab at the … Pangea. McDaniel’s lab continues to work on the enigma of why the ancient moss sex chromosomes continue to evolve so …
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Fungus Fuels Tree Growth
… in order to get  M. elongata and  I. europaea  genomes sequenced and annotated for this study. The team found that, unlike pathogenic or mycorrhizal fungi (mutualist symbionts that induce structural changes in plant roots),  …
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Micro-Scale Applications Group
… access to cutting-edge cell sorting, DNA amplification, and sequence analysis to recover the genomes of uncultivated … now uses laser microdissection to selectively isolate and sequence microbial aggregates after first imaging with …
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Overview of the Genomes OnLine Database (GOLD)
… gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …
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Hiroshi Otani
… is particularly interested in understanding how, when and why microbes decide to produce which metabolites. … BS, …
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Picking Up Threads of Cotton Genomics
Berkeley National Laboratory (Berkeley Lab) has now sequenced and assembled the genomes of these five cotton … insights on crop improvements at a genetic level, including why having multiple copies of their genomes (polyploidy) is … it, which exact base or series of bases you have to alter.’ Why should we invest in something that may not be an …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
Laboratory, and the HudsonAlpha Institute for Biotechnology sequenced sphagnum  genomes from plants selected by a team … and others that preferred the hollows. Those genome sequences showed not only that the sex of a sphagnum plant …
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From Competition to Cooperation
… fungal lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a … relationships outside of the root cells) lineages. To learn why, researchers analyzed 135 fungal genomes representing … species. The 62 mycorrhizal species include 29 newly-sequenced mycorrhizal genomes. With so many fungal  genomes …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… to provide a cataloged and curated culture and genome sequence resource of rumen microorganisms . Thanks to the … in themselves. For example, a few organisms originally sequenced in the Hungate1000 collection harbor enzymes that … rumen microbes are awesome and this is just another example why.” …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… mangrove systems, and he was looking for sulfur-oxidizing symbionts in sulfur-rich mangrove sediments not far from his … large sulfur bacteria have been shown to be hot spots for symbionts,” Woyke said. “Yet the project took us into a very … the bacterial cells on the molecular level. They amplified, sequenced and assembled the genomes. In parallel, Gros’ lab …
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