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… The Science To better understand how beneficial organisms (symbionts) are transmitted between host generations, … the role that bacteria living within a host (endosymbionts) have on fungal host reproduction, and the … with the fungi and bacteria, while the DOE JGI team sequenced and annotated a host genome (Rm ATCC 52813) as …

… Every year, the JGI sequences around 35,000 samples — from plants, algae, …

… in order to get  M. elongata and  I. europaea  genomes sequenced and annotated for this study. The team found that, unlike pathogenic or mycorrhizal fungi (mutualist symbionts that induce structural changes in plant roots),  …

… access to cutting-edge cell sorting, DNA amplification, and sequence analysis to recover the genomes of uncultivated … now uses laser microdissection to selectively isolate and sequence microbial aggregates after first imaging with …

… impressive environmental and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program. … first legume species with a published complete draft genome sequence. At the time, the vital global source of both … of seed oils as biofuel. After analyzing the original sequence, Gary Stacey of the University of Missouri said he …

… on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome … metagenomes can I submit?  How deeply are metagenomes sequenced? A:  For the next call ( CSP New Investigator ), … count toward the 1Tb cap. PacBio metagenomes are currently sequenced without pooling, which yields ~ 180 Gb of data per …

… of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural similarities in proteins that low sequence identity may belie. The technology he’s using is … Deep learning algorithms can vectorize faces… … so, why not proteins?         …

… Laboratory, and the HudsonAlpha Institute for Biotechnology sequenced sphagnum  genomes from plants selected by a team … and others that preferred the hollows. Those genome sequences showed not only that the sex of a sphagnum plant …

… mangrove systems, and he was looking for sulfur-oxidizing symbionts in sulfur-rich mangrove sediments not far from his … large sulfur bacteria have been shown to be hot spots for symbionts,” Woyke said. “Yet the project took us into a very … the bacterial cells on the molecular level. They amplified, sequenced and assembled the genomes. In parallel, Gros’ lab …

… JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative … ) on PhycoCosm tree with several sequenced genomes. 2.  Q: How exactly EcoGroups are built? … or PhycoCosm. At the moment there is no DOE mandate to sequence more Amoebozoa, but we are open to a dialogue about …

… UC Berkeley plant biologist Sabeeha Merchant explains why she works on this alga, how researchers managed to sequence its genome, and what it has to teach us about other …