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Frequently Asked Questions: Proposal Submission
… The deliverables can range from raw sequence data to well-annotated assembled genomes to … listing of approved proposals can be found here. All sequence data will be accessible on the JGI Data Portal. … How much will it cost me to sequence or synthesize my target or obtain metabolomics data? …
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Natural Prodcast Episode 15: Katherine Duncan
… Duncan: Yeah. I love actinomycetes. Dan Udwary: Tell us why. I mean, I know, but I think– Alison Takemura: I want to … of almost finished characterizing them. We’ve got genome sequences, which are just incredible. We’ve looked at the … bit about your perspective on that kind of technique and why it’s valuable to you? Kate Duncan: I think both genome …
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Analysis of the complete mitochondrial genome sequences of the soybean rust pathogens Phakopsora pachyrhizi and P. meibomiae
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Genetic and Functional Diversity Help Explain Pathogenic, Weakly Pathogenic, and Commensal Lifestyles in the Genus Xanthomonas
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JGI@25: Roots of a Mutualist Relationship
… and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published … a JGI Flagship Genome and the first tree to have its genome sequenced. Having this first genome sequence of a … (INRAE). Today, there are nearly 200 mycorrhizal fungal genomes publicly available on the fungal portal …
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JGI@25: Using Team Science to Build Communities Around Data
… countries. (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community … Spatafora of Oregon State University led the effort to sequence 1000 fungal genomes to create two reference genomes … by more than 100 participants. Roughly 700 have been sequenced and annotated, representing 384 fungal families …
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Sequencing the Genomes of the First Terrestrial Fungal Lineages: What Have We Learned?
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A layered defense against plant pathogens
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Fungal diversity notes 253–366: taxonomic and phylogenetic contributions to fungal taxa
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Webinar: MycoCosm Tutorial
… JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. … ) on PhycoCosm tree with several sequenced genomes. 2.  Q: How exactly EcoGroups are built? …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass … sinensis has been published. Analysis of the genome sequence also provides insights into how the multiple …
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Genome sequencing provides insight into the reproductive biology, nutritional mode and ploidy of the fern pathogen Mixia osmundae
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