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… and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published in the journal Nature … a JGI Flagship Genome and the first tree to have its genome sequenced. Having this first genome sequence of a …

… Our research focuses on the assembly of metagenomic sequence data into microbial genomes, which is of … Profile HMM search across all IMG metagenomes, capturing sequence diversity for proteins of interest. … better understanding of complex ecosystems within hard to sequence and assemble samples, such as those from soil and …

… and their complex genomes are more difficult to sequence and assemble, in turn limiting the use of modern, … sets of chromosomes to produce a monoploid reference sequence. For the highly polyploid sugarcane, an … has successfully assembled a first monoploid reference sequence using a targeted approach that focused on the gene …

… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work may … to defend against RNA,” Roux noted, “although it’s unclear why this is so rarely detected.” Developing Approaches for …

… mushroom genomes, and assembling genomes from 60 existing sequences, this work expands the family tree for Lentinula. … decomposers that can break down all of wood’s components — cellulose, hemicellulose, and the toughest molecule, lignin. … Specifically, many species had very similar plant cell wall degrading enzymes (PCWDEs), including carbohydrate-active …