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Natural Prodcast Episode 12: Nadine Ziemert
… really seeing that. And I’m always just looking from the genes and pathways and what’s happening there. And he really … at the same time, you read a lot about the protein or the genes that you are analyzing. And then we’re building … produced. Then we can more easily connect molecules to genes. DAN UDWARY: Yeah, that’s a good point. We can do a …
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Industry Engagement Program
… including User Facilities like the JGI, through its Genesis Mission. Launched in 2025, the initiative aims to … and AI agents to solve key national challenges. The Genesis Mission consortium will connect leading industry and …
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How Maize Makes An Antibiotic Cocktail
… buck. The research team reports that transferring just four genes encoding these enzymes to another plant, such as  … harnessed gene expression data from these lines to identify genes associated with zealexin synthesis. The researchers … the ability to produce diverse zealexins. These genes were synthesized by the U.S. Department of Energy (DOE) Joint …
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Microbiome Data Science Team
… Science 2017, Nature Microbiology 2018), discovery of new genes with important biotechnological applications (e.g., … of Human Microbiomes Reveal Thousands of Small, Novel Genes. Cell 178(5):1245-1259 Nayfach S, et al, (2019) New …
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Genesis and Expansion of Metazoan Transcription Factor Gene Classes
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Better Genome Editing for Bioenergy
… of guide RNAs that were effective against 94 percent of the genes in a lipid-prolific yeast. The Impact The team used … of guide RNAs on  Yarrowia lipolytica to identify essential genes and genes that lead to increased lipid production. … gene in the genome. The JGI  DNA Synthesis Science team synthesized these sgRNAs, cloning them alongside CRISPR-Cas9 …
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Calculating the Costs of Multiple Switchgrass Gene Copies
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Horizontal gene transfer and gene dosage drives adaptation to wood colonization in a tree pathogen
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Bayesian Analysis of Congruence of Core Genes in Prochlorococcus and Synechococcus and Implications on Horizontal Gene Transfer
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Deletion of either the regulatory gene ara1 or metabolic gene xki1 in Trichoderma reesei leads to increased CAZyme gene expression on crude plant biomass
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JGI Portals
… host taxonomy, conjugation potential, antibiotic resistance genes, and ecosystem information. … Plant Comparative Genomics portal. Families of related genes representing the modern descendants of ancestral genes are constructed at key phylogenetic nodes. These …
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Metagenome Program
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