Terabase-scale metagenome coassembly with MetaHipMer
Results
Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen-forming genus Peltigera section Polydactylon
Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill
Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)
A complete toolset for the study of Ustilago bromivora and Brachypodium sp. as a fungal-temperate grass pathosystem
iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria
Metagenome-Assembled Genomes from a Microbiome Converting Xylose to Medium-Chain Carboxylic Acids
A comparative genomics study of 23 Aspergillus species from section Flavi
ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies
Microarray analysis and scale-free gene networks identify candidate regulators in drought-stressed roots of loblolly pine (P. taeda L.)
Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies
