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Frequently Asked Questions: Proposal Submission
… For accepted proposals, sequencing, synthesis, metabolomics and analysis will be … No, the proposal is only for sequencing, metabolomics and/or synthesis effort at the JGI. … While, in general, requests will be for sequencing and its analysis, investigators are encouraged to …
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Taking Stock of the Known and Unknown Microbial Space
… hotspots Over the past few decades, advancements in sequencing technologies have led to an abundance of … “We took a deep dive into over 1.8 million bacterial and archaeal genomes to see how much of their diversity we've … and bioproducts, and medicine. Wading through 30 years of sequencing data, the team composed of Wu, Seshadri, Nikos …
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Tracking the Origins of Methane-Producing Microbes
… Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane Metabolism. Methane-producing archaea are … Until recently, the Mcr gene cluster was found only in the archaeal lineage Euryarchaeota; recent studies now suggest … of the Euryarchaeota and Verstraetearchaeota lineages. The archaeal genome was detected in samples collected by Stephen …
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Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains
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In depth metagenomic analysis in contrasting oil wells reveals syntrophic bacterial and archaeal associations for oil biodegradation in petroleum reservoirs
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Genomic Comparison of Two Family-Level Groups of the Uncultivated NAG1 Archaeal Lineage from Chemically and Geographically Disparate Hot Springs
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… samples in from afar, without ever hearing much about the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with names — …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… metagenome assemblies. Q&A from the Webinar: Input & sequencing Q(uestion): How much DNA is needed for “regular” … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… and viruses vastly outnumber the microbes. Advances in sequencing technologies and computational tools have … in collecting and submitting their microbiome samples for sequencing at the JGI cannot be overstated. Their … to defend against RNA,” Roux noted, “although it’s unclear why this is so rarely detected.” Developing Approaches for …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Microbiome Annotation Group. Many of these bacterial and archaeal genome sequences have been generated using … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… they then ship samples—such as DNA and RNA for sequencing—to JGI. Users are responsible for covering the … proposal include snRNAseq and snATACseq library prep and sequencing? …
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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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