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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… “ Berkeley Lab Receives Multiple 2021 HPCwire Awards ” on the Berkeley Lab Computing Sciences site. Lawrence … went to the Berkeley Lab team comprised of JGI and ExaBiome Project team, supported by the DOE Exascale Computing Project. The award recognized the release of MetaHipMer, an …
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JGI Portals
… new algorithms, models and tools in support of DOE mission priorities. Data discoverability and accessibility are … July 22–July 24 for computing upgrades . We regret any inconvenience. Effective July 27, 2026, the JGI will move to a … the use of an ORCID account with two-factor authentication enabled to log in. Check our Help Site for additional …
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Building Wet and Dry Lab Skills
… Summer 2025 marked the second year of Alabama A&M University students coming to the … by a DOE training grant.  Building off the previous year’s project, undergraduate interns Tamyra Long and Zyiah Mikes … This year, however, there was a new aspect to the project - they also worked with Sharon Greenblum from the …
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FICUS Overview
… The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in … and multidisciplinary nature of DOE mission science projects, this initiative aims to encourage innovative … and selection processes, making it difficult to propose projects that truly integrated the capabilities of more than …
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An Integrated Dataset to Understand Ecosystem Interaction
… tree and soil dataset for understanding the dynamic relationship between poplar trees and their microbial partners. … they are, a recent data set  outlined in  Scientific Data connects molecular features to large ecosystem-level … how different elements of the ecosystem interact and respond to changes in the environment. The Impact Dubbed “the” …
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Natural Prodcast Episode 15: Katherine Duncan
… Dan Udwary: Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today we’re going to talk … of North America. So then I came back and I worked on an EU project, the Scottish Association for Marine Science. And … awesome. I should point out that we also have a couple of projects in the lab that also work in microalgae as well. So …
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Natural Prodcast Episode 23: Aaron Puri
… another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, … in terms of their natural products chemistry, and he has a project with the JGI to synthesize the genes for and explore … connected with a wonderful person who’s a Co-PI on a JGI project Amy Schaefer . So we’ve been friends ever since. …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The … a community science river sampling program at Pacific Northwest National Laboratory. The JGI sequenced over 1,000 … anything. The collaborative consortium behind the GROWdb project demonstrates not only how researchers can …
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Mission
… JGI Mission As a U.S. Department of Energy Office of Science user … genomic capabilities, large-scale AI-ready data and professional expertise to support the global research community in studies of complex biological and environmental systems. We optimize our service to the community …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The … data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact … the fungal Tree of Life, including the 1000 Fungal Genomes Project, which aims to provide a reference genome for each …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and … of fern biology and, more broadly, land plant evolution. Recent findings in Ceratopteris richardii show a long history of dynamic evolution and rapid changes in both … to Z.-H.C.). B.A.A. and D.W.S. acknowledge funding for this project from the Ambrose Monell Foundation. …
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Natural Prodcast Episode 7: Ben Shen
… Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hello, and welcome back for Episode … benefits. DAN: Now, you and I are working together on a project at the JGI to try to find new enediyne clusters and … produce them. Do you want to talk a little bit about that project and how that got started? BEN: Yeah, so I want to …
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