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Mapping the microbiome milieu
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Nigel Mouncey
… genetics that started with his education and carried forward into his roles as a senior research scientist at … of novel production organisms and fermentation processes for vitamins, insecticides, fungicides, platform chemicals, … He is also on the Leadership Team of the National Microbiome Data Collaborative and served as President of the …
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An Integrated Dataset to Understand Ecosystem Interaction
… Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar … molecular features to large ecosystem-level processes for the first time. By collecting data from 27 different … The Impact Dubbed “the” bioenergy tree, poplars are known for their genetic diversity. They hold economic value as …
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Doubling Down on Known Protein Families
… crafted the Novel Metagenome Protein Families (NMPF) Catalog.  “We can now analyze new datasets by comparing … unique makeup of microbe players and the functions they perform, artificially replicating a whole community is … with 8 billion metagenome genes from IMG (the study also references data from the JGI’s  Genomes from Earth’s …
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of reference genomes and thousands of resequenced sorghum varieties, a resource for breeders and researchers to harness the traits that let … has focused on producing high-quality reference genomes. By cataloguing a genome sequence for a line of sorghum, …
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A framework for human microbiome research
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Getting to the core of the gut microbiome
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A blueprint for contemporary studies of microbiomes
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Finding the Fermenters
… the range of bacteria and archaea that rely on this form of metabolism, researchers recently compiled a list of … bioproducts. Summary Researchers at the University of California, Davis and UC Santa Barbara generated a list of … One test was to predict traits of more than 400 cultured rumen prokaryotes from the  Hungate1000 project . They also …
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Partnerships: Myco-Ed
… The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based … techniques and data analyses compile original data for improving fungal genomic resources empower students … goes into iNaturalist. Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 …
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DNA Synthesis Program
… bioenergy solutions.  The program has been a pioneering effort in functional genomics since 2012, with a focus on … by synthesizing genes, pathways, and whole chromosomes for bioenergy and bioproduct applications. The program has … gene synthesis, combinatorial pathway design, and efforts to refactor entire chromosomes, such as a yeast …
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A haplotype-resolved reference genome for Eucalyptus grandis
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