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Getting to the core of the gut microbiome
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Partnerships: Myco-Ed
The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based … techniques and data analyses compile original data for improving fungal genomic resources empower students … a scalable solution for production of high-quality fungal reference genomes, this program is an important initiative …
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The Reference Genome of the Halophytic Plant Eutrema salsugineum
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Reference genome sequence of the model plant Setaria
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Multiple whole-genome alignments without a reference organism
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A unified initiative to harness Earth's microbiomes
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Terabase-Scale Coassembly of a Tropical Soil Microbiome
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Emiley Eloe-Fadrosh
… samples to identify and characterize genomic information from uncultivated microbes and viruses. Prior to … She conducted her postdoctoral training in human microbiome research at the Institute for Genome Sciences at … Microbiol . 8(5):751-753. Nayfach A, et al. 2021. A genomic catalogue of Earth’s microbiomes. Biotechnol . doi: …
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DNA Synthesis Program
… bioenergy solutions.  The program has been a pioneering effort in functional genomics since 2012, with a focus on … by synthesizing genes, pathways, and whole chromosomes for bioenergy and bioproduct applications. The program has … & Offerings … BOOST … Integrated Microbial Genomes and Microbiomes … Mycocosm … Phytozome … Inventory of Composable …
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Doubling Down on Known Protein Families
… crafted the Novel Metagenome Protein Families (NMPF) Catalog.  “We can now analyze new datasets by comparing … unique makeup of microbe players and the functions they perform, artificially replicating a whole community is … with 8 billion metagenome genes from IMG (the study also references data from the JGI’s  Genomes from Earth’s …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work … at Tel Aviv University in Israel, the National Center for Biotechnology Information, and the U.S. Department of … together, learned from JGI’s Nikos Kyrpides that his Microbiome Data Science group was also working on RNA virus …
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Frederik Schulz
… machine learning to find novel functions that may impact microbiome structure and biogeochemical cycles. He provides … discovery pipeline and enrichment metagenomics for terrestrial protists. These approaches enable novel … Science . 376: 1453-1458 Nayfach et al. (2021) A genomic catalog of Earth’s microbiomes. Nature Biotechnology 39, …
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