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… single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to better … experimental characterization methods, in addition to bioinformatics tools to elucidate phage function in this … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …

JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text … array of combinations, are unremarkable, save perhaps for the absence of all the other letters of the alphabet. … genes are turned on is known as DNA affinity purification sequencing or DAP-seq. The technology was developed by Ronan …

… cutting-edge capabilities to help advance their science by generating data in three overarching categories: Sequencing, Synthesis and Metabolomics. Strong internal …

User Support Analysis group provides computational analysis for new technology development and JGI user science … analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and … development of automated analysis pipelines for standard sequencing products performed at scale. Our group also …

… ways to protect poplar and other crops being considered for bioenergy feedstock development. Summary With the aim of … that unlike most flowering plants and animals, fungi lack gene body methylation. The analysis revealed that 5mC in … specific 5mC methyltransferase (MTase) variants. Using new sequencing technologies for producing both reference genomes …

… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … Ladau, J. et al. (2019)  Spatial, Temporal, and Phylogenetic Scales of Microbial Ecology . Trends Microbiol. … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

… overview and major challenges of host prediction methods for uncultivated phages.  Current Opinion in Virology .  49 … 4 , 1895–1906 Roux, S. et al. (2019) Minimum Information about an Uncultivated Virus Genome (MIUViG).  … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …

For many scientists, the culmination of their work into a … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … a quest to better understand the factors and mechanics of gene expression in over 400 fungi species. “Fungi are the …

… technologies to the broader community.  We focus our efforts on integrating database mining and sequence design … We also develop methods for efficient QA/QC based on next-generation sequencing technologies including PacBio and Illumina.  The …