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Phenogenomics reveals the ecology and evolution of Trichoderma fungi for sustainable agriculture
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Systematic Identification of Gene Families for Use as “Markers” for Phylogenetic and Phylogeny-Driven Ecological Studies of Bacteria and Archaea and Their Major Subgroups
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From Competition to Cooperation
… genomes, researchers were able to carry out a broader analysis than had ever been done before to look at how multiple forest fungi have independently … (Berkeley Lab). All of the fungal genomes used in the study are available on the JGI fungal portal  MycoCosm . The …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled … fungal mitochondrial genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science … kingdom, they are well-suited to train machine learning models that predict biological traits from DNA sequences. …
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to reconstruct and model gene regulatory pathways used by the filamentous … We acknowledge the use of deletion strains generated by Grant P01 GM-068087 “Functional Analysis of a Model …
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Unravelling viral ecology and evolution over 20 years in a freshwater lake
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Russulaceae: a new genomic dataset to study ecosystem function and evolutionary diversification of ectomycorrhizal fungi with their tree associates
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Natural Prodcast Episode 18: A CSP Primer
… DAN UDWARY: It’s been a while, but Natural Prodcast is back again for another round of episodes. If you stick around for the … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we … Episode Transcript …
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Secondary Metabolites Program
… of secondary metabolites across bacteria, fungi, algae and plants. These molecules, which are not essential for fundamental growth, provide critical advantages to the … in defense, nutrient acquisition and communication. Studying how these compounds are biosynthesized and their …
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Latent homology and convergent regulatory evolution underlies the repeated emergence of yeasts
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Tour the IGB
… Take a virtual tour of the IGB, home of the DOE Joint Genome Institute. To navigate virtual tours of each floor, click and drag to look around the space, use the graphic rings to … the frontiers of environmental and energy genomics.  For more information about the science depicted, click here …
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How To Use Our Systems
… JGI’s key assets is our user community, comprising a broad range of researchers and trainees who use JGI resources and … have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data … Each portal lists a contact, or you can reach out via the form on our website.   …
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