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Game On: High School Students Drive Everglades Metagenomics Study
… was preparing to teach a second year A-Level Advanced International Certificate of Education (AICE) Biology class at … The project provided the students the freedom to define the specifics. It took the coming together of many unlikely … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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Understanding Wildfire Recovery, Starting in Soil
… , went a step further, using both DNA and messenger RNA (mRNA) sequencing to identify those traits that have helped fungi, … With this metagenomic analysis, it was possible to identify specific attributes — such as heat resistance, fast growth …
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Validation of two ribosomal RNA removal methods for microbial metatranscriptomics
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Expansion of the global RNA virome reveals diverse clades of bacteriophages
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Zhong Wang
… and biostatisticians. Through collaborations with internal and external scientists, the Wang group has developed … metagenome and metatranscriptome assembly, Hadoop based on sequence analysis framework, etc. For example, this group … metagenome binning software … Education … Selected Publications … Software …
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Doubling Down on Known Protein Families
… online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … replicating a whole community is impossible.  Metagenomic sequencing allows researchers to study the entire genetic … environmental categories. Instead, families preferred a specific environment — whether that be soil, animal hosts, …
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Promoter elements associated with RNA Pol II stalling in the Drosophila embryo
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Parallel Evolution of Truncated Transfer RNA Genes in Arachnid Mitochondrial Genomes
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Plant-Microbial Interactions Group
… and spatial transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to better understand the … single-cell profiling methods, including single-cell RNA-seq, single-cell ATAC-seq, and spatial transcriptomics … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … multiple times in order to obtain enough zoospores. DNA and RNA samples generated from the zoospores were then sent to the JGI for whole genome sequencing using the Illumina platform. Unfortunately, both …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal fungus Mucor circinelloides
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