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… And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … almost never Actinomycetes. And so when we look at their genomes we don’t get the same kind of information that we … really exciting work on figuring out how to get genomic sequencing data for the fungus garden because it’s more …

… transcriptomics and epigenomics. Our work varies in scope from the development of highly customized analysis workflows … development of automated analysis pipelines for standard sequencing products performed at scale. Our group also …

… When they tested the screen method on a microbial community from geothermal hot springs, they uncovered a novel … pools, followed by whole genome amplification and shotgun sequencing. The team first tested the approach on bacterial … To validate the predicted cellulases from their captured genomes, the team then used DNA synthesis and cloning, …

… at UC Berkeley. Dr. Pennacchio received his Ph.D in 1998 from the Department of Genetics at Stanford University where … in human and mouse triglyceride metabolism. He is funded by DOE and through continued competitive grant support from NIH. … contact for all High-Throughput Data Generation Platforms (Sequencing, Single Cell, Biodesign, and Metabolomics) as …

… scientists are now getting more complete genomic results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for … usually employ two different methods; shotgun metagenomic sequencing and single-cell sequencing. For years, extracting …

… through analyzing and harnessing genomic information from plants, fungi, algae, non-medical microbes, microbial … access to large-scale datasets and analysis tools for genomes, metagenomes, and metabolomics through its data portals. Supported by the DOE Office of Science's Biological and Environmental …

… But SAR324 can be found throughout the water column, from the warm, well-lit surface, to the blue-lit twilight … their gene expression, the team then sequenced community genomes and expressed gene transcripts (metagenomes, … metatranscriptomes), as well as the genomes of single cells of the uncultivated SAR324. The constellation …

… mass spectrometry-based methods to analyze metabolites from a wide range of biological and environmental samples — … state-of-the-art instrumentation and informatic approaches.By bridging genomics with metabolomics, the Metabolomics … with genomics, transcriptomics, imaging, and other data from EcoFAB systems can provide novel insights into the …

… single cell genomics by collecting nearly 500 single cells from a single low diversity hot spring sediment sample. … value to the other commonly used culture-independent sequencing approaches including amplicon and metagenomic … that were missed within paired metagenome assembled genomes (MAGs), and that dominant populations varied with …

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