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FICUS-NERSC/KBASE
… to solve the most relevant bioenergy and environmental problems.  The mission of the National Energy Research … performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) integrates systems biology data and tools to help predict biological function.   To jointly support these …
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Nick Everson
… Resources, Facilities, IT, Shipping and Receiving, Lab Automation, and Administration departments. He previously served as JGI’s Business Manager from 2007 to … analyst in industry and at the Lawrence Livermore National Laboratory.   … The Deputy of Operations provides oversight and leadership of JGI operations …
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An Automated Tool for Assessing Virus Data Quality
… advances in sequencing technologies and computational approaches, more and more virus sequences are being recovered … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), has developed a command-line tool … a total of 44,652 complete or near-complete viral genomes across both datasets, separating these from the vast majority …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… succumbing to a pathogen. This ‘“alien’” organism — one previously unseen — is, in fact, a microscopic water mold, … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … counties. It has been detected at scores of nurseries across the nation, elevating concerns about the pathogen to …
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Ecosystem Fabrication (EcoFAB) Protocols for The Construction of Laboratory Ecosystems Designed to Study Plant-microbe Interactions
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BinaRena: a dedicated interactive platform for human-guided exploration and binning of metagenomes
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Gaia: An AI-enabled genomic context–aware platform for protein sequence annotation
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Natural Prodcast Episode 4: Nancy Keller
… US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of … challenges were associated with getting good transformation systems going. That has a lot to do with, well, the fact … fascinating. It really is fascinating. You know, us, in the laboratory, humans, we started by isolating this fungus by …
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Coupled laboratory and field investigations resolve microbial interactions that underpin persistence in hydraulically fractured shales
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Structure and dynamics of the microbial communities underlying the carboxylate platform for biofuel production
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Development of a High Throughput Platform for Screening Glycoside Hydrolases Based on Oxime-NIMS
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Cost-effective urine recycling enabled by a synthetic osteoyeast platform for production of hydroxyapatite
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