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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced … MycoCosm — a platform widely used across the research community — the work lowers technical barriers for …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a future-ready foundation     Over … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … accompanied by hypotheses about fungal lifestyle and their roles in ecosystems.” The JGI's comprehensive genomic …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental … and researchers more about the patterns and functions of environmental microbes. Researchers can use the tool to … results in seeing their predicted functional and metabolic roles across global metagenomes (within IMG).  The Impact …
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Simon Roux
… the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the … efforts in the field of viral ecogenomics. For this role, Dr. Roux can rely on more than 10 years of expertise … the Viral Genomics group at the JGI to further explore the ecological and evolutionary drivers of virus-host dynamics …
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User Executive Committee
… The UEC represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that … users and their science including technical capabilities offered, proposal review procedures and the annual user …
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Frequently Asked Questions: Proposal Submission
… See below for a list of Frequently Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific details including project types …
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Ecological and genomic responses of soil microbiomes to high-severity wildfire: linking community assembly to functional potential
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and … is discoverable and accessible. Linking the resources of powerful institutions like the JGI, KBase, NCBI, NMDC, … to facilitate these efforts. Particular areas of emphasis will be the development of tools and …
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Frederik Schulz
… Genome Institute in 2016 and is leading the New Lineages of Life Group. His research is focussed on the discovery of … enable novel insights into the diversity and important ecological roles of microeukaryotes in terrestrial ecosystems. … B.Sc. Biochemistry, University of Applied Sciences Mannheim (Germany) M.Sc. Molecular …
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental … sequences for members of the microbial world through bulk community sequencing (metagenomics) and single-cell … genomics, the vast majority of microbes that play key roles in global biogeochemical cycles remains unexplored and …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … effective in organizing, training and deploying hundreds of community members in their neighborhoods and nearby forests …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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