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CSP Large Scale Call
… on genomic science projects that address sustainable biofuel and bioproducts production, leveraging systems-based approaches to unravel functional capabilities of plants, microbes and microbial communities, global carbon … and nutrient cycling, and biogeochemistry — questions of relevance to DOE’s Office of Biological and Environmental …
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User Executive Committee Charter
… users and their science including technical capabilities offered, proposal review procedures, and the annual user … recommendations to the JGI regarding technical capabilities offered, including areas where more or less capacity is … annual JGI User Meeting, as well as input on other aspects of the meeting such as duration, location, and cost; …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
In honor of the JGI's 25th anniversary in 2022, we have revisited a … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … them. Despite advances in the years since this landmark publication, SOD continued to sweep through dozens of …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … will bind to receptors within biosynthetic gene clusters. Specifically, these are Tet repressors that oftentimes turn … what the natural product might actually be. And so we are specifically looking at non-ribosomal peptides, looking in …
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Micro-Scale Applications Group
Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of … We also apply labeling strategies that allow us to select specific uncultivated microbes for sequencing based on their level of metabolic activity (BONCAT+FACS). To provide additional …
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Products
Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of the product and … community, such as a microcolony, microbial aggregate, or a specific subset of free-living cells. Extracted DNA may be …
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Natural Prodcast Episode 17: Cassandra Quave
Prodcast episode 17. The guest we have this week is Professor Cassandra Quave from Emory University, with joint appointments in the School of Medicine and College of Arts and Sciences. She’s an … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …
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Extensive epigenetic reprogramming during the life cycle of Marchantia polymorpha
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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New Microviridae isolated from Sulfitobacter reveals two cosmopolitan subfamilies of single-stranded DNA phages infecting marine and terrestrial Alphaproteobacteria
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Game On: High School Students Drive Everglades Metagenomics Study
The project provided the students the freedom to define the specifics. It took the coming together of many unlikely … abundance of genes involved in environmentally significant metabolic pathways related to methane production, nitrogen … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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