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Reekeekee- and roodoodooviruses, two different Microviridae clades constituted by the smallest DNA phages
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced nearly 10,000 new annotations of fungal mitochondrial genomes — the DNA found inside … as a resource for AI-driven approaches to predicting fungal metabolic traits from genomic data to understand how …
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Virocell resource manipulation under nutrient limitation.
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … them. Despite advances in the years since this landmark publication, SOD continued to sweep through dozens of …
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Natural Prodcast Episode 9: Roger Linington
… DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger … University in British Columbia, Canada. This is the last of the podcasts we recorded in my hotel room at SIMB, or the … to work on it for another week? Or do we need some kind of specific advance to to start working there? ROGER:  I think …
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Micro-Scale Applications Group
… Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also seeks out new approaches that utilize microfluidics/microdroplet technology in order to enhance the … The JGI uniquely offers the first quantitative Stable Isotope Probing (SIP) …
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Sequencing Technologies & Products
… well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our users. This includes scaling the technologies and enabling state-of-the-art sample processing and sequencing capabilities. … An assay used for profiling transcription factor binding sites across entire …
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Predicting phage–host specificity
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User Executive Committee Charter
… users and their science including technical capabilities offered, proposal review procedures, and the annual user … recommendations to the JGI regarding technical capabilities offered, including areas where more or less capacity is … annual JGI User Meeting, as well as input on other aspects of the meeting such as duration, location, and cost; …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … will bind to receptors within biosynthetic gene clusters. Specifically, these are Tet repressors that oftentimes turn … what the natural product might actually be. And so we are specifically looking at non-ribosomal peptides, looking in …
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Toward Understanding Phage:Host Interactions in the Rumen; Complete Genome Sequences of Lytic Phages Infecting Rumen Bacteria
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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