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CSP Functional Genomics
… The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to … accepted proposals, sequencing, synthesis, metabolomics and analysis will be provided for free to the PI by the … All proposals will be externally peer-reviewed for …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… On February 17, 2021, JGI and the Environmental Molecular Sciences … (EMSL) co-hosted a JGI Engagement: Accessing Resources at Multiple DOE User Facilities with a Single Proposal webinar, inviting researchers to apply for access to multiple genomics and molecular …
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The fate of 35S rRNA genes in the allotetraploid grass Brachypodium hybridum
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … Takemura, whose voice you’ll hear in a minute – we work for the US Department of Energy Joint Genome Institute, or … Episode Transcript … This is the first episode of Natural Prodcast, a podcast produced by the US Department of …
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Multiple displacement amplification compromises quantitative analysis of metagenomes
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … time. They also discovered more than 6,000 mitochondrial sequences previously unrecognized within existing public … annotation due to features like self-splicing introns and multiple genetic codes. Adding to the challenge, …
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Plant Microbial Interactions Group
… Plants are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … and are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, … Plant microbiomes hold the amazing ability to influence plant …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and … The Science A reference genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis has been … of the genome sequence also provides insights into how the multiple chromosomes of Miscanthus arose by ancient …
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global … crop improvements at a genetic level, including why having multiple copies of their genomes (polyploidy) is so … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … of millions of trees in California alone. With the genome sequence in hand, the UC team led the charge to develop …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… The Sequence to Function: Applications and Analysis for the Future (SFA²F) meeting brings together …
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