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Natural Prodcast Episode 19: Bill Fenical
… ecologists that they needed to consider chemical impact on species interactions, communication, that kind of thing. But … by Bristol Myers Squibb. And it is now in phase III in multiple sites, phase III human clinical trials. ALISON … forward to seeing the data when it finally gets off the sequencers. The pandemic has obviously slowed JGI down a …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… lots of fungi around. Within a forest’s soil, hundreds of species decompose debris, mobilize nutrients from that … at Lawrence Berkeley National Laboratory (Berkeley Lab) sequenced 1 trillion bases — a terabase — of soil RNA for … Head at the JGI.  Along with an improved understanding of multiple forest systems, this work sets up protocols and …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… New 5-year strategic plan outlines how the JGI will advance the bioeconomy, leveraging … These kinds of data could open opportunities along multiple avenues, including agriculture, climate modeling, … and operational themes and objectives for the next five years. It also includes more than 130 …
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Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis
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Plant Microbial Interactions Group
… fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial … viruses that all contribute to a dynamic ecosystem. We are interested in how plants self-organize, influence, and are … model system by identifying phages and characterizing this multipartite phenomenon in additional plant and bacterial …
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A Comparison of Microbial Genome Web Portals
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Natural Prodcast
… metabolites all refer to the chemicals that make species unique and different from one another. They are incredibly important to medicine, the environment, and human health. As the JGI acts on …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a … for which there were previously no genomes of symbiotic species available: 73 saprotrophs and 62 mycorrhizal …
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Natural Prodcast Episode 3: The Primer, Part 3
… able to explore DNA sequencing and actually get to the DNA sequence – sequences for the genes that code for the … millions of years to find the precursor sequences. Those species are long dead. And if the DNA sequences have been … you want to collaborate, let us know!  Thanks, and see you next time! …
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Synthetic Biology Lab
… The Synthetic Biology lab is divided into a DNA synthesis production group and a synthetic … We focus our efforts on integrating database mining and sequence design with scaling the production of large, … We also develop methods for efficient QA/QC based on next-generation sequencing technologies including PacBio and …
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A Comparison of the Biotechnological Potential of Marine and Terrestrial Species of Two Orders of Sordariomycete Fungi
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Improving the Cacao Genome and Phytozome
… Global chocolate brands can’t exist without cocoa According to the  International Cocoa Organization (ICCO), global … through the Cacao Genome Database project. The genome sequence was assembled by the plant team at the  HudsonAlpha … version of the JGI plant portal Phytozome at  phytozome-next.JGI.doe.gov . One of the goals in updating the genome …
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