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Uncovering Novel Genomes from Earth’s Microbiomes
… repository of 52,515 microbial draft genomes generated from environmental samples around the world, expanding the … 2020 in  Nature Biotechnology . Known as the GEM (Genomes from Earth’s Microbiomes) catalog, this work results from a … – that’s pretty remarkable.” Adding Value Beyond Genome Sequences Much of the data had been generated from …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… photosynthesizing organisms called phytoplankton (from the Greek phyto for ‘plant’ and planktos for … than previously suspected. “That would cause significant consequences on the entire food web, and therefore ecosystem … communities on filters, they sequenced DNA ‘marker’ gene sequences to identify the microbes. And in order to …
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Who We Are
… through analyzing and harnessing genomic information from plants, fungi, algae, non-medical microbes, microbial … and bioproducts. The JGI continues to receive its support from the Biological and Environmental Research program in …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … genes found across each of the fungal species were protein-coding hotspots. “Ensuring that the most expressed genes are … covering the entire kingdom of fungi. “The information from this project may also have a practical relevance with …
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Draft Genome Sequence of the Basidiomycete White-Rot Fungus Phlebia centrifuga
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Draft Genome Sequence of the White-Rot Fungus Obba rivulosa 3A-2
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JGIota: Looking Back at Sequencing for Soybeans
… been able to look into soybean’s strengths – along with a fungus that threatens this important crop. Hear more about that work from researchers Gary Stacey (University of Missouri), Peter …
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A Grass Model to Help Improve Giant Miscanthus
… genomic tools, allows Miscanthus to both inform and benefit from breeding programs of related candidate bioenergy … many desirable features of biofuel grasses can be studied from simpler (and smaller) models, Miscanthus has a large … (DOE) Bioenergy Research Center, along with researchers from the Energy Biosciences Institute, the DOE Joint Genome …
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Cataloging the Microbes that Manage the Health of River Systems
… researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds in the … harnessed a community-science program to collect samples from across the country to standardize the process. They … resource that provides information at multiple scales from genes to the community level. The Impact Rivers are …
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Fungal Friends or Foes in Plant Roots
… fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their analysis identified … a mycobiome culture collection consisting of fungal species from natural Arabidopsis populations around Europe. The JGI sequenced and annotated 41 fungal isolates from the collection. The team then compared this dataset …
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Talaromyces borbonicus, sp. nov., a novel fungus from biodegraded Arundo donax with potential abilities in lignocellulose conversion
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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