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Widespread natural variation of DNA methylation within angiosperms
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On the origin and evolutionary consequences of gene body DNA methylation
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Diversity of cytosine methylation across the fungal tree of life
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Widespread adenine N6-methylation of active genes in fungi
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… New studies show methanogenesis is not exclusively for Euryarchaeota. Atmospheric … within the Thermoproteota phylum —  Korarchaeia and  Methanomethylicia   — grow by methanogenesis. Both studies were … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s …
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The Expanding Universe of Methane Metabolisms in Archaea
… of the Institut Pasteur in France, the importance of methanogenesis and the presence of methanogens in nearly all … set of genes present in archaea with metabolisms involving methyl-coenzyme M reductase (MCR), the final step in … abundant populations detected in the Washburn sediments and based on metabolic reconstructions, the team has two main …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled … The Science Researchers produced nearly 10,000 new annotations of fungal mitochondrial genomes — the DNA found … search environmental data, they developed a two-stage metagenomic detection pipeline: First, they scanned over 26,000 …
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Methanogenesis and Salt Tolerance Genes of a Novel Halophilic Methanosarcinaceae Metagenome-Assembled Genome from a Former Solar Saltern
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Mapping the Earth’s Hidden Fungal Kingdom
… comparative genomics to decode millions of mystery genes and lay a future-ready foundation     Over the past billion … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … intelligence approaches for prediction of fungal lifestyles based on genome sequences.” The Fungal Knowledge Gap The …
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Nutrient Inputs Stimulate Mercury Methylation by Syntrophs in a Subarctic Peatland
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Who We Are
… National Laboratory. The JGI consists of 225 researchers and support staff in the Integrative Genomics Building in Berkeley, California.  Our location at the IGB fosters team science and collaboration with partner organizations such as the DOE … at Lawrence Berkeley National Laboratory ( Berkeley Lab ), and part of the Biosciences Area. The JGI is focused on …
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Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem
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