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The White-Rot Basidiomycete Dichomitus squalens Shows Highly Specific Transcriptional Response to Lignocellulose-Related Aromatic Compounds
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H2-saturation of high affinity H2-oxidizing bacteria alters the ecological niche of soil microorganisms unevenly among taxonomic groups
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Complete Genome Sequence of the Plant Growth-Promoting Endophyte Burkholderia phytofirmans Strain PsJN
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… metagenome assemblies. Q&A from the Webinar: Input & sequencing Q(uestion): How much DNA is needed for “regular” … beyond quantity, input quality (i.e., presence of “intact” high-molecular weight DNA) is an important factor as well … setup, we can include as part of our data analysis plan mapping of short-reads datasets (metagenome or …
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JGI on the 2020 Highly Cited Researchers List
… Congratulations to the 2020 Highly Cited Researchers at the JGI! They are among those … the last decade, demonstrated by the production of multiple highly-cited papers that rank in the top 1% by citations for … Schmutz were part of a consortium that  released a very high quality reference genome sequence of green millet ( …
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User Programs
… For accepted proposals, sequencing, synthesis, metabolomics and analysis will be … with DOE mission-relevant projects that call for expansive sequencing, synthetic biology, and metabolomics capabilities … Letters of Intent. Proposals may include synthetic biology, sequencing, and metabolomics. Proposals may include …
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Mapping the Earth’s Hidden Fungal Kingdom
… Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … early, developing standardized workflows to produce high-quality, comparable genome assemblies across diverse … can successfully predict fungal lifestyles and ecological niches from genomic features alone. In one major project …
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Plant Program
… by environmental change, focusing on plant resilience — highlighting the vulnerabilities of monocultures and the … Green Genomes (OGG) project seeks to develop comparative high quality genomes and annotations across the plant … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… Institute State University, was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … those posed by bark-boring beetles, he said. An additional response to the crisis implemented by the UC team was the … Publication: Tyler BM et al. Phytophthora genome sequences …
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Systems-wide analysis revealed shared and unique responses to moderate and acute high temperatures in the green alga Chlamydomonas reinhardtii
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Calculating the Costs of Multiple Switchgrass Gene Copies
… origin events? Do the cytotypes react differently in response to the environment? We set out to explore these … use this unique opportunity to quantify how transitions to higher ploidy could be generating these observed patterns. … of genomic, quantitative genetic, landscape, and niche modeling approaches, we contrasted the diversity of 4X …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… the event and shared updates. Here are a few of the highlights: Mario Banuelos (2017 graduate intern): Assistant … where he will be working on the Spruce and Peatland Responses Under Climatic and Environmental Change (SPRUCE) … basis of health, illness, disease risk, and treatment response due to fungal genomics internship with Igor …
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