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Low-abundance populations distinguish microbiome performance in plant cell wall deconstruction
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Kanwar Singh
… part of his time assisting JGI users by processing their single cell samples using our high throughput pipeline. He also explores new methods for …
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A versatile toolkit for high throughput functional genomics with Trichoderma reesei
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A Collaboration to Improve Plant Genome Annotations Across Species
… of RNA molecules transcribed from all the genes within a cell or tissue at a specific time or under specific … handling 18 different species is beyond the capacity of a single lab. Growing different species poses significant … plants but not the ammonium. These results highlight differences in plants’ response to nitrate …
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Development of a High Throughput Platform for Screening Glycoside Hydrolases Based on Oxime-NIMS
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… with Cole and Serrano to collect and analyze the single nuclei and spatial transcriptomics data this work … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Small cells with big secrets
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Ploidy evolution in a wild yeast is linked to an interaction between cell type and metabolism
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Optofluidic Raman-activated cell sorting for targeted genome retrieval or cultivation of microbial cells with specific functions
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Ancient Algae Reveal Secrets of Plant Evolution
… 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  Zygnematophyceae , … land. Key gene groups involved in stress tolerance and multicellularity enabled plants to develop complex structures and … plants to transition to terrestrial life.  These led to highly detailed assemblies for three strains of  Zygnema …
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User Programs
… and analysis will be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.   Proposal Call FICUS CSP Large Scale CSP New …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… into genes critical for roles including plant growth and cell wall development.  M. polymorpha is also among one of … Program . The comparative framework provided by these high quality reference genome sequences could help … Pangenomes encompass a plant’s genetic diversity beyond a single reference genome, which is key to understanding its …
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