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Simon Roux
… the development of novel computational tools to identify virus sequences, the design of new experimental approaches … Nature Microbiology 4, 1895–1906. Schulz et al., 2020. Giant virus diversity and host interactions through global … Microbiology Resource Announcements … Education … Selected Publications … Awards and Honors …
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JGI@25
Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. … references dozens of iconic JGI contributions to advancing the frontiers of environmental and energy genomics. The …
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Uncovering Novel Genomes from Earth’s Microbiomes
… genomes for just a small fraction of Earth’s microbial diversity. Because most microbes cannot be cultivated under … National Laboratory (Berkeley Lab), and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of … .) Nayfach also worked with another team on predicting host-virus connections between all viruses in  IMG/VR (Virus) and …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have … that will help solve energy and environmental challenges. Viruses are everywhere — in soil, the sea and, of course, … aspect of viruses in the environment — their sheer genetic diversity. As pioneers of this field, the JGI has leveraged …
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Nikos Kyrpides
S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . … Systems. Mol Cell . S1097-2765 Schulz F, et al. 2020. Giant virus diversity and host interactions through global … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar … Thomson Reuters …
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Offerings & Capabilities
The central mission of the JGI’s Genomic Technologies department is   ensuring users have access to cutting-edge capabilities to help advance their science by generating data in three overarching categories: Sequencing, …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book … the world, resulting in a five-fold increase of RNA virus diversity. “The world of viruses around us is vast, and we …
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Tanja Woyke
… organelles. Science 376:1453 Schulz et al. 2022. Giant virus biology and diversity in the era of genome-resolved … User Programs … Education … Awards and Service … Selected Publications …
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Game On: High School Students Drive Everglades Metagenomics Study
Advanced International Certificate of Education (AICE) Biology class at Florida’s Boca Raton Community High School. … They chose this location because much is unknown about the diversity of organisms (taxonomy) and particularly those in … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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Sequencing Submission Requirements for DNA Synthesis
When submitting sequences to the JGI DNA Synthesis program, please … should be emailed to  Miranda Harmon-Smith, Synthetic Biology Project Manager . … How To Create an Annotated GenBank File There are several easy-to-use open source tools for converting DNA …
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