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Genomic and functional analyses of fungal and bacterial consortia that enable lignocellulose breakdown in goat gut microbiomes
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly … genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced … dataset of its kind ever assembled. The team identified 15 core genes shared across all fungi, and found that some of …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and … registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … nutrients from that decay, and deliver those nutrients to tree roots and soil. These fungi help shape a forest’s …
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User Programs
… and analysis will be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.    Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics JGI-TMF Critical Minerals and … more about our individual calls and other opportunities to work with the JGI …
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal   Goal (hours)**   Actual Total   Actual % Goal   FY …
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Gut Fungi: Unexpected Source of Novel Chemicals
… complex compounds — an energetically expensive feat thought to be too costly for them. The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest their last leafy meal. In their … and a gift from the Gordon and Betty Moore Foundation to MAO. A portion of this research was performed under the …
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Data Policy & Support
… Read our research integrity and data code of conduct. … JGI Scientist Code of Conduct …
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JGI Portals
… expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, models and tools in support of … algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. Book a …
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Fungal & Algal Program
… The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental … the biological mechanisms that enable fungi and algae to play a vital role in carbon cycling, biodegradation and … sequencing technologies and advanced genomic analysis to explore the rich diversity of fungi and algae. These …
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A molecular survey of Australian and North American termite genera indicates that vertical inheritance is the primary force shaping termite gut microbiomes
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Evolution and expression of core SWI/SNF genes in red algae
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Expanding Virophage Diversity
… in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … Virus)—for the virophage marker gene MCP, they were able to identify 44,221 total virophage partial sequences, … diverse new virophage genomes containing all four core genes. These virophages were found in diverse habitats …
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