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Natural Prodcast Episode 15: Katherine Duncan
… before– or kind of around about when the first genome sequencing was done. But natural products– marine natural … that’s just incredible to think about. And then, from an genomic point of view, I mean, I don’t need to say to you, … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Natural Prodcast Episode 3: The Primer, Part 3
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … and the 90s. And so we started to be able to explore DNA sequencing and actually get to the DNA sequence – sequences … of biology. You know, I’ve personally been able to work in genomics, in protein structure, in synthetic biology, …
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Game On: High School Students Drive Everglades Metagenomics Study
… decided to do an environmental microbial community (metagenomic) soil study in an untouched region of the … DNeasy PowerSoil Kits and sent the samples to the JGI for sequencing.  While JGI processed, sequenced, and analyzed … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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Picking Up Threads of Cotton Genomics
… their genomes were “remarkably” stable. “We thought we were sequencing the same genome multiple times,” Schmutz … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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JGI@25: Using Team Science to Build Communities Around Data
… for an encyclopedia of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would … “We currently have 19 genomes sequenced, 15 that are in sequencing or assembly right now, and eight more that we are … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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Data Ecosystem
… cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with NERSC and the … to facilitate these efforts. Particular areas of emphasis will be the development of tools and infrastructure for microbiome data science, and …
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Workforce Development & Education Outreach
… to enter the STEM workforce by fostering an understanding of our role in advancing the energy and environmental genomics research frontier.  Learn more about the JGI's … internship partnership that started in the summer of 2014. … Modeled on the JGI-UC Merced internship program, …
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2024 Progress Report
The Integrative Genomics Building (IGB) seen above is home to the DOE Joint … processed 13,700 metabolomics samples With our users, 247 publications were published   … Our primary objective is to … Revio. They enable increased capacities and faster sequencing, and at the same time help us manage costs. We …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… a new methodology, scientists are now getting more complete genomic results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the … usually employ two different methods; shotgun metagenomic sequencing and single-cell sequencing. For years, extracting …
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A One-Stop Shop for Analyzing Algal Genomes
… data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the … greater bioeconomy. By bringing together publicly available genomic data on algae into one place, PhycoCosm allows users … sequence and understand. A team of researchers led by Algal Genomics Program lead Igor Grigoriev and data scientist Alan …
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