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Dan Rokhsar
… 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of … IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, …
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Learning to Look
… “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be spotted with a striped … to conduct a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to …
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Genome-wide identification of bacterial plant colonization genes
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Elucidating Bacterial Gene Functions in the Plant Microbiome
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Bacterial barcoding facilitates plant microbiome studies.
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Filling in the Plant Tree of Life
What if we understood plants and how they adapt to their ever-changing … crops. But most available genomes are from narrow swaths of the plant tree of life. One project aims to change that. …
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Calculating the Costs of Multiple Switchgrass Gene Copies
A collaborative team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for … previous study conducted by our research team surveying the genomic and phenotypic diversity across the natural range of … niche evolution between 4X and 8X linked to climate adaptation. Overall, these results indicate that the 8X …
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Synthesis
Platform capabilities support researchers exploring how to convert sequence into functional assessments. This is … automations for DNA design, assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables users to validate hypotheses generated from mining genomic data by designing and assembling physical DNA …
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Natural Prodcast Episode 6: Marc Chevrette
… … DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … by watching Amanda Hurley’s presentation from the 2019 JGI Genomics of Energy & Environment Meeting.] He’s also a … of the opinion that on the geological timescale, that most bacterial natural product systems evolved, you know, a …
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The More the Merrier: Making the Case for Plant Pan-genomes
… abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids … plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … senior authors. “It offers us the possibility to explore genomically the whole complex of progenitors and descendant …
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Natural Prodcast Episode 20: Brian Bachmann
… … DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I … mechanistic enzymology to natural product biosynthesis to genomics to directed evolution– but it’s just the– it really …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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