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Calculating the Costs of Multiple Switchgrass Gene Copies
… a feedstock for biomass-based biofuel production. As seen with many commonly cultivated commercial crops such as … previous study conducted by our research team surveying the genomic and phenotypic diversity across the natural range of … grasses have and will use to respond to climate shifts. Changes in ploidy might play a key role in this response. …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to … short audio production, we’ll hear from Karolina Heyduk, an evolutionary plant biologist at the University of Hawai’i at Mānoa. I recently caught up with Karolina at the Plant and Animal Genomes, or PAG …
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Fungus Fuels Tree Growth
… root cells. The fungus is almost always found among and within poplar trees, and in an effort to understand its … fungi (mutualist symbionts that induce structural changes in plant roots),  M. elongata  doesn’t have as many … the fungus decreased the expression of poplar genes associated with plant defense (e.g. jasmonic acid and …
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User Support Analysis Group
… projects. We perform analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led …
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Tanja Woyke
… deciphered function and host-symbiont interplay using metagenomics. Taking on a Research Scientist position in 2007, … School of Natural Sciences since 2015. Prospective users with specific questions regarding their proposed research … User Programs … Education … Awards and Service … Selected Publications …
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Model Fern Reveals Insight into DNA Thievery in Ferns
Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and … show a long history of dynamic evolution and rapid changes in both genome content and structure following a … environmental stresses, ferns’ secondary metabolites and associated genes are great resources for bioremediation, new …
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A Novel Freshwater to Marine Evolutionary Transition Revealed within Methylophilaceae Bacteria from the Arctic Ocean
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Feathermoss and epiphytic Nostoc cooperate differently: expanding the spectrum of plant–cyanobacteria symbiosis
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Natural Prodcast Episode 9: Roger Linington
… in making this happen. We had a really fun conversation with Roger about all this, in terms of how to build an … ROGER:  That are found that way. And so relatively simple changes like that, I think, will make a really big … of mass spectrometry, everybody will bemoan the challenges associated with data analysis, and particularly, with …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… carbon into soil and boosting biofuel feedstocks with less fertilizer. For millions of years, underground … the expression of over 12,000 fungal genes, in addition to associated plant genes.  All together, these data offer a … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Natural Prodcast Episode 20: Brian Bachmann
First and foremost, our interview this week is with Professor Brian Bachmann from Vanderbilt University’s … of matter that are even marginally better, then that changes the game. And you can reopen the book and come up … mechanistic enzymology to natural product biosynthesis to genomics to directed evolution– but it’s just the– it really …
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