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Calculating the Costs of Multiple Switchgrass Gene Copies
… A collaborative team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for … of the genome , which can have pronounced ecological and evolutionary consequences. A previous study conducted by our … that reduces water loss, compared to the process used by most plant species.) Understanding how the interplay between …
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Picking Up Threads of Cotton Genomics
… all five cotton lineages and of cotton D are available for comparative analysis on JGI’s plant data portal  Phytozome , … that relate directly and indirectly to genetic diversity, evolution, wild germplasm utilization and increasing the … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting … step for many projects at the JGI. The quality of the starting material is one of the greatest predictors …
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, … submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User … to soil carbon storage during simulated range shifts of plant-fungal symbionts …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science … molecule, lignin. Understanding Lentinula genomes and their evolution could provide strategies for converting plant … across genomes also provided an opportunity to assess commonalities. The enzymes that Lentinula fungi rely on to …
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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, “the more … plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … said John Vogel, head of the Plant Functional Genomics program at the JGI and a senior author on the …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … Facility, found that the fungus Olpidium is a link in the evolution and transition of fungi from aquatic to … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of …
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Genetic Associations in Four Decades of Multienvironment Trials Reveal Agronomic Trait Evolution in Common Bean
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Natural Prodcast Episode 21: Elizabeth Parkinson
… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … really hard just for you. And the JGI Comms team. But mostly you. Anyway…I’m really happy today to be handing over … based on what component they might be interested in like genomics, metabolomics, just basic chemistry, natural …
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The “Most Wanted” Taxa from the Human Microbiome for Whole Genome Sequencing
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… crop and ornamental seeds sold for the upper Midwest are often very different than those bred for Texas. Identifying … plant’s traits and genetic diversity,” said John Lovell, an evolutionary biologist at HudsonAlpha and first author of … sites. “This paper is a combination of really cutting-edge genomics and genetic analysis with large scale data …
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Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi
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