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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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CSP Functional Genomics
… The CSP Functional Genomics call is to enable users to perform … genomics research and to help them translate genomic information into biological function.  The emphasis is on … to this call may be submitted to the JGI at any time using a simple web-based form and are reviewed annually. For …
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Natural Prodcast Episode 3: The Primer, Part 3
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … to your extract and try to purify the molecule that’s causing that test to be successful. Right? Because we don’t – … 80s and the 90s. And so we started to be able to explore DNA sequencing and actually get to the DNA sequence – …
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Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … – problems that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic … about terms and so I will probably end up interchangeably using the term secondary metabolite and specialized …
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes … sample and then sorting these cells so that their DNA could be sequenced. Their protocol,  detailed in the … viability of HCR-FISH+FACS for selectively enriching low abundance microbial groups from complex natural communities. …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and incredibly complex — making it difficult to grasp a deeper … they can change position within a genome — into certain DNA segments has led the fern to its gene hoarding and those …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo … While most organism’s genetic information is encoded in DNA, with RNA delivering the instructions inside DNA to the … the team, the computational work that led to the uncovered abundance of RNA viruses is just the beginning. “I often say …
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base … uncovering the true diversity of the fungal kingdom. The abundance of fungal genomes underscores the need for a more … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils
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Natural Prodcast Episode 6: Marc Chevrette
… DAN: You’re listening to the US. .Department of Energy Joint Genome … at the Broad that was looking to develop new methods for DNA sequencing of microbes. And what kept breaking our … MARC: Yeah, so one of the approaches that Tiny Earth is using to be different than screening in the past, is in the …
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Secondary Metabolites Program
…   The JGI’s Secondary Metabolites Program focuses on the exploration of … growth, provide critical advantages to the organisms producing them, and are often involved in defense, nutrient acquisition and communication. … algae and plants. These compounds are key to organisms' interactions with their environments and with each other, …
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