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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available fungal mitochondrial genome … within existing public databases and recovered more than 3,000 others from environmental datasets. All of the … of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by …
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The fate of 35S rRNA genes in the allotetraploid grass Brachypodium hybridum
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Salt tolerance of two perennial grass Brachypodium sylvaticum accessions
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Building Wet and Dry Lab Skills
… the second year of Alabama A&M University students coming to the DOE Joint Genome Institute for research and … Functional Genomics Group to study the effects of  Brachypodium distachyon plant root exudates on the plant … seeds. We also use CRISPR-Cas9. And right now we have over 300 plants that we’re trying to figure out the biome of. …
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Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative
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Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits
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Bacterial endosymbionts influence host sexuality and reveal reproductive genes of early divergent fungi
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Lipid metabolic changes in an early divergent fungus govern the establishment of a mutualistic symbiosis with endobacteria
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) … % Goal   FY 2026 Total   700.0     8,760     Q1 2026 175 313.081 179% 2,208 2,064 95.4% Q2 2026 175 243.806 139% …
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How to Submit Sequencing Samples
… the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level reports and tracking … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been …
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Sequencing Technologies & Products
…   Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our users. … An assay used for profiling transcription factor binding sites across entire genomes. This technology has been …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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