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Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species
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Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate
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Heterospecific Neighbor Plants Impact Root Microbiome Diversity and Molecular Function of Root Fungi
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CSP New Investigator Call
… initiatives new to the JGI. Projects must be independent of ongoing JGI proposals, and lead PIs cannot have been lead … projects will provide pilot data to assess feasibility of a novel approach or form the foundation for a large-scale … accepted proposals, sequencing, synthesis, metabolomics and analysis will be provided for free to the PI by the …
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Anuvia taps JGI for expertise to pinpoint products from beneficial soil microbes
… water resources and restoring and maintaining healthy soils – are at the heart of sustaining food and bioenergy security for a steadily … soil enrichment, is partnering with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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Natural Prodcast Episode 15: Katherine Duncan
… here today, and we wanted to talk to her about a whole list of things. So we have a Scripps background shared together, … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …
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Webinar: SIP technologies at EMSL and JGI
… Joint Genome Institute (JGI) provide access to a variety of tools that leverage stable isotopes to measure carbon and … at JGI and EMSL such as DNA-SIP, Protein SIP, Flux Balance analysis with metabolites, Isotope Ratio Mass Spectrometry, … so the label has to go into the plant, out through the roots, into the soil, and then picked up by the rhizosphere, …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Survey of Setaria's natural diversity reveals seed dispersal in … a very high quality reference S. viridis genome sequence. Analysis of these plant genome sequences also led … Eurasia. The team also identified a gene associated with leaf angle, which determines how much sunlight leaves can …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting … step for many projects at the JGI. The quality of the starting material is one of the greatest predictors …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… Over 40 percent of the cereal crop’s genes respond to drought stress. The … under three watering conditions, and then collected root, leaf and rhizosphere (soil surrounding the root) … P. Sloan Foundation Grant 2013-10-27 (to the University of California, Berkeley [N.V.]); L’Ecole Normale …
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Natural Prodcast Episode 22: Alison Narayan
… Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society for Industrial … this year. And today we have our conversation with Professor Alison Narayan, from the University of Michigan. I hope she’ll accept this description, but I’d …
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Variation in Root Exudate Composition Influences Soil Microbiome Membership and Function
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