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Position-Specific Metabolic Probing and Metagenomics of Microbial Communities Reveal Conserved Central Carbon Metabolic Network Activities at High Temperatures
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Dinoflagellates alter their carbon and nutrient metabolic strategies across environmental gradients in the central Pacific Ocean
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IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses
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Boosting Small Molecule Production in Super “Soup”
Do metabolic pathways from engineered yeasts still work in … have both the machinery to make products such as proteins, and the mechanisms for maintenance to keep processes running smoothly. As …
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Viral Genomics Group
Microbes drive critical ecosystem functions and affect global nutrient cycling, however they do so under … overview and major challenges of host prediction methods for uncultivated phages.  Current Opinion in Virology .  49 … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a framework essential to understanding how these plant …
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Intra‐species genetic variability drives carbon metabolism and symbiotic host interactions in the ectomycorrhizal fungus Pisolithus microcarpus
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Photochemical alteration of organic carbon draining permafrost soils shifts microbial metabolic pathways and stimulates respiration
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ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies
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A framework genetic map for Miscanthus sinensis from RNAseq-based markers shows recent tetraploidy
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… mutualism or parasitism between some archaeal hosts and their hitchhikers. The Science Within the archaeal … how these hosts and hitchhikers coexist is key for understanding their impact on wider ecosystems, but … Ca . Altiarchaeum harbored self-targeting CRISPR systems, metabolic modeling showed that  Ca . Huberiarchaeum would …
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Forming Scientific Connections and Building Community
… of Science User Facility, hosted three undergraduates and seven graduate students from UC Merced through their … experiences and what they’ll take with them as they go forward in their careers.   Listed below are the interns, … research.” Mentor: Juan C. Villada Project: “ Investigating metabolic network of symbiosis using genome-scale metabolic …
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