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User Executive Committee Charter
… Executive Committee (UEC) represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their science including technical capabilities offered, proposal review procedures, and the annual user …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting … 1) Complete Sample Metadata form Sample metadata is collected via …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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A roadmap for equitable reuse of public microbiome data
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Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations
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Bacterial Diversity in the Cecum of the World’s Largest Living Rodent (Hydrochoerus hydrochaeris)
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … that has evolved over a billion years of evolution offers catalogs of enzymes, secondary metabolites, and other parts …
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Rex Malmstrom
… Dr. Malmstrom is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI … and carbon consumption of SAR11 bacteria, the most abundant bacterial group in the ocean. Later during his postdoctoral … Ph.D. in Marine Biology/Biochemistry, University of Delaware BA in …
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Exploring the Diversity of the American Prairie’s Switchgrass
… A tall native plant of the North American prairie, switchgrass … a complex genome and, as a species, encompasses dizzying diversity. So, a team of scientists made an ambitious plan …
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Natural Prodcast Episode 3: The Primer, Part 3
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … to be here and be able to discuss this incredible, natural diversity that we have at our fingertips. So I’m very … Episode Transcript … This the third episode of Natural Prodcast, and the third and final part of our Primer …
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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that … in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … the team concluded, “we provide a global analysis of the diversity, distribution, and evolution of virophages.” Lead …
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How Much Do rRNA Gene Surveys Underestimate Extant Bacterial Diversity?
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