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Len Pennacchio
… In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging … where he uncovered the genetic cause of a rare form of human epilepsy and subsequently generated one of the first …
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Plant Program
… With collaborative user projects, the JGI’s Plant Program delves into … for sustainable solutions to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … The Plant Program advances our understanding of plants’ biological …
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Natural Prodcast Episode 15: Katherine Duncan
… Dan Udwary: Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today … familiar with that. Kate Duncan: Yeah, so there’s some blockbuster metabolites, like astaxanthin, that make your farmed … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature … GROWdb for comparative analyses with their own data on the KBase platform, without having to download anything. The … This work was partially supported by awards from US Department of …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting … 1) Complete Sample Metadata form Sample metadata is collected via …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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A roadmap for equitable reuse of public microbiome data
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Mechanistic insights into consumption of the food additive xanthan gum by the human gut microbiota
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UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota
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De novo mutations mediate phenotypic switching in an opportunistic human lung pathogen
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled … genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced … The work conducted by the U.S. Department of Energy Joint Genome Institute …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Survey of Setaria's natural diversity reveals seed dispersal in wild … Danforth Center’s mission is to feed the hungry and improve human health. So there’s a major question: how to turn a C3 … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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