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The central mission of the JGI’s Genomic Technologies department is   ensuring … Science Programs and  Operations enable the JGI to focus on expanding molecular capabilities and functional genomics, … cell genomics, DNA synthesis, and metabolomics.   … Deputy of Genomic Technologies …

Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of … technology in order to enhance the quality of single-cell genomes and directly link functional information with … DNA amplification, and sequence analysis to recover the genomes of uncultivated microbes. We also apply labeling …

… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … browser that allows other researchers to study the genomes and predict the metabolic abilities of these … phenotype and genotype of fermentative prokaryotes on IMG … Publication … Datasets … Datasets … Datasets …

Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are … of countering multiple attempts at virus infections. Their genomes include short DNA sequences that code for CRISPR … system to study virus-host interactions. Approximately 150 archaeal viruses had been previously identified. The JGI …

Sugarcane was the last major crop without a reference quality genome and now crop researchers can work … most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the sugarcane cultivar R570 has been  …

Survey of Setaria's natural diversity reveals seed dispersal in … 600 green millet plants and released a very high quality reference S. viridis genome sequence. Analysis of these … Program , sequences of several hundred green millet plant genomes were generated, though the final analyses focused on …

… systems determine mutualism or parasitism between some archaeal hosts and their hitchhikers. The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of …

Dr. Malmstrom is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI … genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the … dissertation in life sciences 2006 … Education … Selected Publications … Awards and Honors …

… have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy Joint Genome Institute … decomposition. She’s also participated in the 1000 Fungal Genomes Project and has an interest in cross-disciplinary … in fungal genetics and evolution, he helps manage the Bacterial-Fungal Interactions Science Focus Area. He has …