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Identifying genomic data use with the Data Citation Explorer
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Viral Genomics Group
Genomics group . Research Team … Coclet, C. and Roux, S. (2021) Global overview and major challenges of host prediction methods for uncultivated phages.  Current Opinion in Virology .  49 … can tailed phages be?  Nature Reviews Microbiology.   19 , 407 Berg, M. et al. (2021) Host population diversity as a …
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JGI@25: From Life at the Extremes to Editing Genomes
Congratulations to Jennifer Doudna of the University of California (UC), Berkeley and Lawrence Berkeley National … past few years they have partnered with JGI’s Microbiome Data Science group led by Nikos Kyrpides , mining the … CA. Banfield’s observations of the CRISPRs in her microbial sequences piqued Doudna’s interest. As Doudna noted in her …
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Building Sphagnum Genomic Resources
Sphagnome data would enable researchers’ insights on their potential … model system focused on carbon cycling studies, rather than for food or fuel applications. The Impact Sphagnum’s impact … of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. For the sphagnome project, germplasm …
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You Can Move, But You Can’t Hide
… and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found in … MGEs based upon their gene content and their genetic sequences. The software was created by researchers under the direction of Microbiome Data Science Group Lead Nikos Kyrpides at the U.S. …
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Genome‐wide associations with flowering time in switchgrass using exome‐capture sequencing data
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Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data
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Fast and accurate identification of plasmids and viruses in sequencing data using geNomad
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Tissue Cultivation, Preparation, and Extraction of High Molecular Weight DNA for Single-Molecule Genome Sequencing of Plant-Associated Fungi
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Ian Blaby
Since 2019 Dr. Blaby heads the DNA synthesis platform at the Joint Genome Institute, where he leads three … strain engineering and bioinformatic tool development/data analysis for synthetic biology and functional genomics. … with a view to developing a deeper understanding of sequence-based gene function. … B.Sc. (HONS) – University of …
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Taking Stock of the Known and Unknown Microbial Space
Metagenomic datasets could help map out microbial diversity hotspots … genomic biodiversity. Using publicly available genome sequence data generated over the past three decades, their … the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We …
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Partners
… has a long-term partnership with the HudsonAlpha Institute for Biotechnology for our Plant Program, and is further leveraging the … Energy Research Scientific Computing Center (NERSC) and data infrastructure projects—the DOE Systems Biology …
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