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DOE Metrics
…     2,167     *Includes Illumina and PacBio sequencing platforms. **Operating Hours target is based on 98% of the total … = 91 days; Actual Operation = 24 days due to significant sequencer downtime related to the shelter-in-place. ††† … capabilities to analyze complex genomic or metagenomic datasets. [Download PDF] Q3 – Report on new computational …
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Natural Prodcast Episode 20: Brian Bachmann
I wanted to tell you about in this introduction. First and foremost, our interview this week is with Professor Brian … And at the time, it was really exciting when people would sequence [DNA]. The genome was– well, that hadn’t really … a postdoc and went to industry to see what they had, what data they had. DAN UDWARY: And they had a lot of data for …
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Homepage
…   Gain access to omics technologies generating community data at zero cost —  submit a proposal.  …
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Natural Prodcast Episode 4: Nancy Keller
… to Natural Prodcast! This is episode 4! From here on out, for a while, we’re going to be presenting some conversations … Aspergillus was pretty good, but, you know, just from a data standpoint, just figuring out introns and dealing with, you know, weirdness in the sequence. You know, some clusters are not clustered…   …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work may be akin to finding a single …
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Informatics Advisory Committee
The IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI … effective management and strategic objectives for the JGI’s data science, informatics and information technology (IT) …
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JGI@25: From Life at the Extremes to Editing Genomes
Congratulations to Jennifer Doudna of the University of California (UC), Berkeley and Lawrence Berkeley National … past few years they have partnered with JGI’s Microbiome Data Science group led by Nikos Kyrpides , mining the … CA. Banfield’s observations of the CRISPRs in her microbial sequences piqued Doudna’s interest. As Doudna noted in her …
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Environmental Genomics Group
… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … Clum, A. et al. (2021)  DOE JGI metagenome workflow … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …
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JGI Accepts 17 Proposals for Community Science Program
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … on harnessing genomics to developing sustainable resources for biofuels and bioproducts. Andrew Nelson of the Boyce … collaboration that produced the reference genome sequence for Eucalyptus grandis. Accessing recently burned …
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User Advisory Committees
… the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley … to establish with our stakeholders. The guiding principles for participating on JGI Advisory Committees are outlined in … effective management and strategic objectives for the JGI’s data science, informatics and information technology (IT) …
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JGI Hosts GPU Hackathon in May
WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing unit (GPU)-based high-performance computing resources, an upcoming hackathon led by … is one of the largest producers of environmental genomics data and has a strong reputation in the community,” said JGI …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that … relevant to living on a changing planet. Transcript for Audio   ALISON:  Hey! I’m Alison Takemura at the US … called crassulacean acid metabolism, or CAM — that’s C-A-M, for short — helps plants that have it lose less water in a …
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