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Secondary Metabolites Program
…   The JGI’s Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae … The Secondary Metabolites Program targets the vast and underexplored reservoir of secondary metabolites produced by bacteria, fungi, algae and …
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Secreted Effector Proteins of the Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways.
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Natural Prodcast Episode 15: Katherine Duncan
… was really before– or kind of around about when the first genome sequencing was done. But natural products– marine … of North America. So then I came back and I worked on an EU project, the Scottish Association for Marine Science. And … But what would you say is– what do you think is the thrust of your lab, going forward? Kate Duncan: Yeah, so I …
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Sequencing Submission Requirements for DNA Synthesis
… Sequence files for all constructs should be emailed to  Miranda Harmon-Smith, Synthetic Biology Project Manager . … File There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an open source desktop application written by M. Wayne Davis or commercial options include …
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Natural Prodcast Episode 22: Alison Narayan
… DAN UDWARY: Hey everyone. Welcome back to Natural Prodcast. This continues the … enzymes to do chemical reactions. Obviously, in my work, in genome mining, we have an awful lot of crossover, where us … enzymology. So, we talked about her JGI DNA synthesis project to explore the chemical capabilities of flavin …
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Open Frameworks Training the Next Generation of Scientists
… Educational training technologies provide opportunities for … program for higher education that develops skills in fungal biology and genomics.  Myco-Ed :  The Mycological … involving academic faculty and researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User …
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Special Initiatives & Programs
… Early Career Research Program .   If “BERSS” is not mentioned in the BER funding call, proposals are NOT eligible for BERSS support through the JGI (with the exceptions of DE-FOA-0003453 and DE-FOA-0003615 , which are both … 10 Tbp sequencing, 500 kbp synthesis, and 200 polar/500 nonpolar metabolomics samples, and should generally conform …
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Genome Project Standards in a New Era of Sequencing
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Natural Prodcast Episode 3: The Primer, Part 3
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … that secondary metabolism is an important strategic thrust. We think by exploring more aspects of secondary … we need people from outside of the JGI to come to us with projects that will help us actually drive this strategic …
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A Complex Confection Decoded: Sugarcane Reference Genome
… was the last major crop without a reference quality genome and now crop researchers can work toward advancing sugarcane biotechnology. The Science Considered the world’s most harvested crop by tonnage, … the location of genes that provide resistance to the brown rust disease that can devastate a crop. The Impact In …
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Obligate biotrophy features unraveled by the genomic analysis of rust fungi
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The Sphagnome Project: enabling ecological and evolutionary insights through a genus‐level sequencing project
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