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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have … materials, rumen microbes and their enzymes are an optimal study subject that could lead to more sustainable energy … — a then-novel approach which allows scientists to study microorganisms that can’t be cultured by analyzing and …
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Metagenomes from Experimental Hydrologic Manipulation of Restored Coastal Plain Wetland Soils (Tyrell County, North Carolina)
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New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … datasets encompassing >150,000 isolate genomes, 230,000 metagenome-assembled genomes (MAGs), and 40,000+ metagenomes along with curated environmental- and other …
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Bacterial barcoding facilitates plant microbiome studies.
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Natural Prodcast Episode 8: Eric Schmidt
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … the end, we took an approach that was kind of a simplified metagenome sequencing approach to pick this system apart.  … crack this case, then that would open up our field to other study. And so it was kind of an early example, to try to …
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Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… warm-adapted microbes edge polewards, they’d oust resident tiny algae. The cold polar oceans give rise to some of the … algae. But human-induced climate change , a new study suggests, is displacing these important cold-water … Colder waters nearer the poles, however, tend to favor eukaryotes ( microorganisms with a nucleus). These …
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Frequently Asked Questions: Project Management
Eukaryotic projects: Kerrie Barry or Vivian Ng Prokaryotic projects: Tijana Glavina del Rio , Danielle Graham , or Miranda Harmon-Smith DNA … IMG (citation: https://doi.org/10.1093/nar/gkaa939 ) Metagenomes and Single Cells: IMG/M   (citation: …
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DOE Metrics
FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal (hours)** … 99.8% Q3 2025 175     2,140     Q4 2025 175     2,167     *Includes Illumina and PacBio sequencing platforms. …
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Genome sequencing of Porostereum spadiceum to study the degradation of levofloxacin
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Suillus: an emerging model for the study of ectomycorrhizal ecology and evolution
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