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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid developments in … al. (2021) CheckV assesses the quality and completeness of metagenome-assembled viral genomes. Nature Biotechnol . … bacteria and archaea.  Nature Biotechnology  35(8):725-731 Mukherjee S, et al. (2017) 1,003 reference genomes of …
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JGI Scientists Pen Genome Watch Articles
Tanja Woyke and other JGI researchers made their debut writing for the Nature Reviews Microbiology column last year — … affiliated with the Wellcome Sanger Institute in the UK — a nonprofit that was founded to help sequence the human … characterizing the human microbiome  by its genomes and metagenome , rather than just by 16S ribosomal RNA gene …
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Microbial polyphenol metabolism is part of the thawing permafrost carbon cycle
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Microbes in thawing permafrost: the unknown variable in the climate change equation
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Global Diversity of the Brachypodium Species Complex as a Resource for Genome-Wide Association Studies Demonstrated for Agronomic Traits in Response to Climate
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Genome-Wide Association Studies across Environmental and Genetic Contexts Reveal Complex Genetic Architecture of Symbiotic Extended Phenotypes
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Doubling Down on Known Protein Families
… — worse, they didn’t even know how big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights … (IMG/M) database, they successfully crafted the Novel Metagenome Protein Families (NMPF) Catalog.  “We can now … ‘Dark Matter’ Microbial communities living everywhere from soils and stomachs to the deep sea are capable of doing a …
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Coming-of-Age Characterization of Soil Viruses: A User’s Guide to Virus Isolation, Detection within Metagenomes, and Viromics
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Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert
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From Competition to Cooperation
Tracking evolution of symbiotic lifestyles across multiple fungal … validate how mycorrhizal fungi play an integral role in soil carbon storage. Summary There are three types of fungal … (Berkeley Lab). All of the fungal genomes used in the study are available on the JGI fungal portal  MycoCosm . The …
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JGI@25: Studying Sorghum’s Survival Skills
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … feedstock for biofuels thanks to its drought and flood hardiness. Even with little water, full sunlight and hot …
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Genome‐Wide Association Study Identifies Candidate Loci Underlying Agronomic Traits in a Middle American Diversity Panel of Common Bean
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