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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… previously unseen — is, in fact, a microscopic water mold, genetically related to such aquatic species as diatoms and kelp. Dubbed Phytopthora ramorum (pronounced: Fy-TOFF-thor-uh … 1;313(5791):1261-6. doi: 10.1126/science.1128796 Science News of the Day: Stokstad E. Genetics. Genomes highlight …
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Viral Genomics Group
… abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …
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Accelerating Metagenomics Discoveries with Deep Learning
… in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data … rather than single cells or isolated strains, is easy to generate, but difficult to assemble and interpret. The … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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Exploring and Thinking Critically about Scientific Problems with JGI Interns
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The United States of America and Scientific Research
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Natural Prodcast Episode 19: Bill Fenical
… to talk to one of the real legends of natural products, Professor Bill Fenical from Scripps Institution of … the most effective application, of marine molecules in general. DAN UDWARY: Maybe can you explain to our audience … that really looked promising. We found that there were new genera, these basic taxonomic group called the genus. We …
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Understanding Wildfire Recovery, Starting in Soil
A metagenomic look at the soil microbes present a year after a … across a spectrum of burned soils. By connecting microbial genes with functions useful for forest recovery, this study … Colorado Boulder and Colorado State University. The work conducted by the US Department of Energy Joint Genome …
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A Plant Root Atlas for Tracking Developmental Trajectories
Universität zu Berlin   has developed an atlas that maps gene expression patterns in the  Arabidopsis root, profiling … Single-Cell Data Viewer Tool on Phytozome Biosciences News:  Plant Single-Cell Solutions for Energy and the … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen
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Evolution of a Fungal Gene Expression Regulator
… bioenergy feedstock development. Summary With the aim of producing at least one reference genome for every family of … that unlike most flowering plants and animals, fungi lack gene body methylation. The analysis revealed that 5mC in … – similar to the MAC clusters for 6mA), rather than in genes, which suggests that 5mC may play a role in genome …
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Automated annotation of scientific texts for ML-based keyphrase extraction and validation
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