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Tracing the Evolution of Shiitake Mushrooms
… from around the world. By complete sequencing of 24 new mushroom genomes, and assembling genomes from 60 … samples was a global collaboration that brought together 39 researchers from eight different countries. Genome and … award 0000238431 to D.H., the GENOBIOREF (BIO2017-86559-R) project of the Spanish Ministry of Science and …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… Ravikiran Madichetty and mentors TBK Reddy and Dimitri Stamatis, Porting XML/Python Based Quality Control to … Vazquez and mentor Bryce Foster, Benchmarking Bioinformatics Tools for Sequence Similarity Searching Morgan … and cultivating and sequencing extremophile protists from a hypersaline alkaline lake in California. Sandra Hernandez …
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Micro-Scale Applications Group
… of single-cell genomes and directly link functional information with individual cells. Research Team    …
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Viral Genomics Group
… especially metatranscriptomics, to better highlight and ultimately predict the main viral impacts in these microbiomes. … and metatranscriptomics provide invaluable information on virus diversity and activity in microbial … annotate, and bin viruses from metagenomes. mSystems 9:e00888-24. https://doi.org/10.1128/msystems.00888-24 …
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UC Merced Interns Reflect on Their JGI Summer Projects
… language processing techniques to categorize genetic information. Learn more about their work here in a series of … participated in this internship remotely due to COVID-19 restrictions, but virtual events and technology enabled a … Edgar Jimenez (undergraduate) Mentors: Sharon Greenblum and Matt Mingay Click the image to watch the video …
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An Automated Tool for Assessing Virus Data Quality
… of metagenome-assembled viral genomes, including estimation of genome completeness and removal of contamination … developed a command-line tool called CheckV that can automatically do both. The work was led by research scientist … and guidelines for providing the minimum amount of information for an uncultivated virus genome. CheckV has already …
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Mapping Heat Resistance in Yeasts
… its closest relative S. paradoxus at high temperatures (39°C/102°F). The Impact One of the challenges in … to compare across very distant species that no longer mate to produce progeny. The ability to pinpoint which genes … that are present in the native state. During culture at 39°C, some of these half-dosage mutants died and others grew …
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Special Initiatives & Programs
… and PIs must provide an award number and contact information for their DOE program officer.  Submitters are … and availability of data and other resources. For more information, contact Tanja Woyke, Deputy for User Programs . …
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Natural Prodcast Episode 11: Marnix Medema
… to find new antibiotics. And, as many projects in bioinformatics, what, something that was born out of frustration in … 10 or 20 genomes at once then we really need to have automated tools for this. Because well, you can’t do this all … Yeah. So antiSMASH. We built antiSMASH as a tool to automate the identification of biosynthetic gene clusters. So …
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Webinar: PhycoCosm Tutorial
… by Sara 4.  Q(uestion): Are all CSP produced data automatically assembled and run through your annotation pipeline … are open right now – large scale CSP and FICUS with March 24 and March 17 deadlines. 25-30% of proposals are selected, … groups of people. Talk to collaborators and colleagues 9.  Q: Only algal genomes in PhycoCosm? A: PhycoCosm is …
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Frequently Asked Questions: Proposal Submission
… review and is selected, we will provide you with the information you need for the grant. … projects can be found here . The quality of the starting material is one of the greatest predictors of a successful … are appropriate and ensuring compliance before any materials are transferred to JGI. …
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User Executive Committee Charter
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