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Picking Up Threads of Cotton Genomics
… out of the green pods in every direction. There are 100 million families around the world whose livelihoods … lineages. Senior authors of the  paper published April 20, 2020 in  Nature Genetics include Jane Grimwood and Jeremy … these things take not five or eight years, but sometimes 10 or 15 years, because the technology develops over time.” …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between … when we mapped the first sequenced RNA from the soil, only 10% of them were mapping to the fungal genomes at the JGI,” … tropics.”  Francis Martin will be a keynote speaker at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of …
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Events
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Microbiome Data Science Team
… Pavlopoulos GA et al. (2023) Unraveling the functional dark matter through global … from the human gut microbiome. Nature Biotechnol.  39(1):105-114. Schulz F, et al. (2020) Giant virus diversity and … of the global human gut microbiome. Nature   568(7753):505-510 Amann R. et al (2019) Toward unrestricted use of public …
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Mapping the Earth’s Hidden Fungal Kingdom
… and yeasts, outnumber their ancient relatives by nearly 10 to one in sequenced collections. Yet the early-diverging … for the next generation of scientists. Initiatives like our 1000 Fungal Genomes Project established crucial phylogenetic … data for researchers worldwide. As the JGI scales toward 10,000 annotated genomes, this infrastructure advantage …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… Serve the Changing Planet (download a copy at jointgeno.me/2024StrategicPlan .) This plan aligns the DOE Office of … In service of solutions that will impact society, the 2024 strategic plan introduces the JGI’s new vision to lead … path, has previously proven successful; in the 2018-2023 five-year strategic plan, the JGI accomplished 90% …
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Crysten Blaby-Haas
… Dr. Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials Initiative, a … and led the Quantitative Plant Science Initiative (2017-2022), a BER Science Focus Area (SFA).  … Handling Editor, Journal Experimental Botany, 2022 – present University of Florida MCS Advisory Council, …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… You’d go find the cash converter box, feed it a $1, $5 or $10 bill and receive a set amount of tokens, commensurate in … in order to enhance what it can offer. As of June 2025, Genome Ocean was ranked the No. 1 most-downloaded …
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A Collaboration to Improve Plant Genome Annotations Across Species
… Avinash: In the initial planning phase, there were about 10 groups that came together to standardize the experimental protocols. Then, in 2020, seven more groups joined the project to contribute to …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… switchgrass ( Panicum virgatum ), which has established 10 experimental gardens located in eight states spread across 1,100 miles. Switchgrass is a perennial grass that quickly … from half of the United States. As  reported January 27, 2021 in  Nature , the team led by researchers at the …
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JGI Welcomes New UEC Members
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JGI Announces 2025 New Investigator Portfolio
… a list of researchers whose proposals were accepted for 2025. Utilizing the JGI’s resources, these researchers will … the next deadline for proposal submission is Sept. 9, 2025, for inclusion in the November 2025 review. You can also find more information about the …
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