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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated … from complex environmental samples. The Science A team led by researchers at the Max Planck Institute (MPI) for Marine … in situ hybridization (HCR-FISH). In contrast to standard FISH where a one probe adds one fluorescent …
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MISIP: a data standard for the reuse and reproducibility of any stable isotope probing-derived nucleic acid sequence and experiment
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… relevant to living on a changing planet. Transcript for Audio   ALISON:  Hey! I’m Alison Takemura at the US … to pull that water through the whole plant system, they need to open these pores in their leaves called stomata. And … their water,  and they still get the carbon dioxide they need. Karolina is working to better understand what genetic …
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Webinar: PhycoCosm Tutorial
… A(nswer): If you find that our trees are incorrect or need to be changed, please contact us and we’ll work work it … again how did you pick genomes to be on the genomes portal? For the taxa I work on, there are 7 genomes on NCBI but your … agree, we also have a way to do manual annotation – not covered in these tutorials 6.  Q: On the genome synteny …
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Fungal Friends or Foes in Plant Roots
… health and diversity, which can in turn boost yields for both food and for candidate bioenergy feedstock crops. Summary A plant is … office building, its roots are akin to the ground floor lobby. People walking into the lobby have many reasons for … on Plant Sciences (CEPLAS), both funded by the Deutsche Forschungsgemeinschaft. F.M. salary was covered by the …
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MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources
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Expanding standards in viromics: in silico evaluation of dsDNA viral genome identification, classification, and auxiliary metabolic gene curation
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Ice cover extent drives phytoplankton and bacterial community structure in a large north‐temperate lake: implications for a warming climate
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A Standardized Synthetic Eucalyptus Transcription Factor and Promoter Panel for Re-engineering Secondary Cell Wall Regulation in Biomass and Bioenergy Crops
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth (Toby) Kellogg and other researchers at the Danforth Plant … for the first time.  “To our knowledge, nobody has ever discovered a dispersal gene that way,” said Kellogg, a senior …
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Industry Engagement Program
… that had remained largely unknown and underutilized by industry. When Director Nigel Mouncey joined the JGI in … and curated data to support AI applications. In an effort to lead AI-driven genomic innovation to advance … and state-of-the-art sample processing.  Our Biodesign platform enables users to test hypotheses via designed and …
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Webinar: SIP technologies at EMSL and JGI
… from the Webinar: 1. Q(uestion): How much DNA is required for the JGI SIP metagenomics pipeline? A(nswer):  The more … to put at least a microgram of DNA in the tube so you’d need at least 2 micrograms in the sample to start with. 2. … Like others, our turnaround time has been impacted by the pandemic. 3. Q: What instrument / method does the JGI …
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