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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… metagenome assembly from Wisconsin’s Lake Mendota. In this episode: a look at the supercomputing that stitches together … large datasets with the assembler program MetaHipMer2. Oak Ridge National Lab is home to two supercomputers — … Frontier — that process terabytes of data with MetaHipMer2. And the National Energy Research Scientific Computing …
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What Happens To a Rainforest When You Dial Up Drought?
… key role in pulling that carbon out of the atmosphere. This episode, researchers take a look at what happens to that … in a fully enclosed, human-made ecosystem: Biosphere 2.      …
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Single Cell Research Group
… Bacteria and Archaea has steadily been widening since 2005. This gap is also reflected in the strongly biased … through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., Leahy S. C., Attwood G. T., Teh K. H., …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… The Impact Chloroflexota are bacteria that act like tiny natural engineers with special skills to break down … The work (proposal:  https://doi.org/10.46936/10.25585/60000691 , and  … (DEB 1557042), NASA (80NNSC17KO548), and the National Natural Science Foundation of China (No. 92251302, 91951205, …
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Catabolic repression in early-diverging anaerobic fungi is partially mediated by natural antisense transcripts
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Comparative transcriptomics as a guide to natural product discovery and biosynthetic gene cluster functionality
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Genetic determinants of switchgrass-root-associated microbiota in field sites spanning its natural range
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Tanja Woyke
… After studying the mechanism of action of antifungal natural products and their derivatives during her Ph.D. in … postdoctoral research at the DOE Joint Genome Institute in 2004. The main object of her research was the symbiont … at the University of California, Merced's School of Natural Sciences since 2015. Prospective users with specific …
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SIPs with Standards
… that can be useful to multiple teams and analyses. This episode, Rex Malmstrom (JGI), and Roli Wilhelm (Purdue …
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Shotgun metagenomic analysis of microbial communities from the Loxahatchee nature preserve in the Florida Everglades
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Natural variation in genes potentially involved in plant architecture and adaptation in switchgrass (Panicum virgatum L.)
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Natural Variation in the Multidrug Efflux Pump SGE1 Underlies Ionic Liquid Tolerance in Yeast
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