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User Support
… work and outline roles and responsibilities resulting in a formal Statement of Work (SOW). All work performed at the JGI is initiated via the Work Initiation … your overall experience working with the JGI. Find out more about our Project Management Office (PMO) Project …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our … Genomics, and Facilities Integrating Collaborations for User Science calls. These documents have been shared … to soil carbon storage during simulated range shifts of plant-fungal symbionts … Elucidation of the gene regulatory …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of … etc., switchgrass is polyploid. This means it contains more than two copies of the genome , which can have … across hundreds of naturally-occurring genotypes (in this case, a plant’s complete genetic makeup) and 10 common …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute … works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in genome improvement … Acids Research . The project spans 15 years and involves more than 17 research groups. The team set out to …
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AraR plays a more dominant role than XlnR in plant biomass conversion in Penicillium subrubescens
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Alabama A&M Interns Access An Abundance of Knowledge
… an internship program to bring students to the JGI for research training experience. Enabled by the DOE RENEW … Vogel on researching the effects of Brachypodium distachyon plant root exudates on the plant microbiome. They also took … with fellow interns and scientists alike. Want to learn more about their experience? Watch the short video below. …
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Filling in the Plant Tree of Life
What if we understood plants and how they adapt to their ever-changing … better? We could unlock new innovations to drive more productive food, medicine, and bioenergy crops. But most available genomes are from narrow swaths of the plant tree of life. …
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Viral Genomics Group
… overview and major challenges of host prediction methods for uncultivated phages.  Current Opinion in Virology .  49 … 4 , 1895–1906 Roux, S. et al. (2019) Minimum Information about an Uncultivated Virus Genome (MIUViG).  … viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group Lead:  …
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Better Crops With a Pointillist Approach to Plant Genomics
In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which genes help plants grow, get nutrients, weather drought, and more. And eventually, their findings could help us grow …
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JGI@25: Strengthening Soybean
… we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great … plant project completed by the JGI. It has since been cited more than 5,400 times, including a number of projects that … a very large and complex genome with lots of repetitions, making it very difficult to sequence — roughly 1.25 billion …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… the shared genetic toolkit of ancestral and present-day plants The Science In a recent  Nature Genetics paper , … to spread across most of the plant’s ecosystems. The Impact For decades, the liverwort  M. polymorpha has been used as a … could help researchers better understand related genes in more complex plants that could be applied toward …
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A Plant Root Atlas for Tracking Developmental Trajectories
… nearly 100,000 single root cells and combining the information with previously published datasets. The work was  … the largest integration of single-cell datasets in plants and provides a foundation for still larger efforts in … areas for one of the Area divisions. Dickel, and more recently Cole, have been leading these efforts, which …
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