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A Grass Model to Help Improve Giant Miscanthus
… miscanthus often appear in discussions of rapidly growing plants whose biomass can be renewably converted into energy … biofuel grasses can be studied from simpler (and smaller) models, Miscanthus has a large and complex genome whose … and Bioproducts Innovation (CABBI), a Department of Energy (DOE) Bioenergy Research Center, along with researchers from …
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his doctoral … of JGI user science projects spanning bacteria, fungi, and plants. His team is also developing single-nuclei sequencing methods to characterize gene regulation at the level of individual cells across …
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Proteomics for Validation of Automated Gene Model Predictions
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Duplications and losses in gene families of rust pathogens highlight putative effectors
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How to Submit Sequencing Samples
… Please follow the steps outlined below. Click the drop-downs to learn more about each step in the process. If you … assess DNA or RNA mass prior to shipment to the  JGI. The documents below (posted with permission) demonstrate the … & quality requirements for samples submitted to the DOE JGI. DNA Preparation Guidelines RNA Preparation …
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Fungal & Algal Program
… functioning — particularly in their roles associated with plants (mycorrhizae, endophytes, growth promoters, or pathogens) and as the most … carbon and produce valuable metabolites. The program seeks to expand our understanding of algal biology using … team in collaboration with the JGI. Conserved Fungal Genes of Unknown Function offer a collection of fungal genes …
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Webinar: PhycoCosm Tutorial
… contact us and we’ll work work it out 2.  Q(uestion): Do you publish the data sets the trees are based upon? A: … Q: If we have RNAseq or proteome data that is based on a model that is not based on a genome model with PhycoCosm, … We think they’re valuable for comparative studies (see video for Alan’s response)     …
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Secondary Metabolites Advisory Committee
… operations, and scientific relevance and quality. The SMAC does not perform management functions nor do they direct the Program's management teams on how to …
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Brachypodium: A monocot grass model system for plant biology
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… with JGI was one of the first things we actually started doing when starting the lab. It has been, especially from an … The consortium looked at how different bioenergy relevant plants can produce species-specific blends of terpenoids, … proposals if it’s different from what is on offer and to see if it can be done.  After the technical review, …
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DNA Synthesis Science User Advisory Committee
… and scientific relevance and quality. The Committee does not perform management functions nor do they direct the Program's management team on how to …
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Genome‐wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon
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