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Examples: Successful LOIs & Submissions
… to soil carbon storage during simulated range shifts of plant-fungal symbionts … the gene regulatory networks governing terpenoid-mediated plant environment interactions to enable advanced bioenergy …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute … experimentally derived biological roles to genes. Sarah:  How many plants did you all look at? Avinash: We started off … project. Sarah:  I assume you were not doing this alone. How many groups were you working with? Avinash: In the …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… we’ll hear from Karolina Heyduk, an evolutionary plant biologist at the University of Hawai’i at Mānoa. I … it lose less water in a hot, dry environment. Figuring out how plants evolved to deal with hot and dry conditions could … and I kicked off our conversation with a quick recap of how plants, in general, work. KAROLINA:  We all know plants …
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JGI@25: Using Team Science to Build Communities Around Data
… we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great … along with 100 of his colleagues in the comparative plant genomics community. The project’s aim is to generate … representing all major evolutionary lineages in the land plant tree of life.   As of the start of 2022, there were …
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Metabolic engineering for valorization of macroalgae biomass
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Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass
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The Big Deal About Short Plants
… Despite their diminutive stature, “short plants” such as mosses could be uniquely powerful in helping scientists link plant genetic sequences to what they do. But sequencing the genome of one short plant — fire moss — had an unexpected hurdle: ginormous sex …
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Natural Prodcast Episode 15: Katherine Duncan
… ask the first question. Kate, can you tell me the story of how you got into secondary metabolites? Kate Duncan: So I … and things about understanding the natural world and how we relate to that. And so I read those and changed my … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …
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Jeremy Schmutz
… For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community driven science for JGI Plant Flagship Genomes and DOE relevant cellulosic … In addition to continuing to develop strategies for plant genome sequencing, he manages the de novo plant …
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Better Crops With a Pointillist Approach to Plant Genomics
… In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which genes help plants grow, get nutrients, weather drought, and more. And …
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Deletion of either the regulatory gene ara1 or metabolic gene xki1 in Trichoderma reesei leads to increased CAZyme gene expression on crude plant biomass
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with … also known as “polyploidy,” is common among flowering plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many genes after …
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