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Viral dynamics in a high-rate algal pond reveals a burst of Phycodnaviridae diversity correlated with episodic algal mortality
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Fungus Fuels Tree Growth
… partnered with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Program in order to get  M. elongata and  I. europaea  genomes sequenced and annotated for this study. The team … for the DOE. The work conducted by the DOE Joint Genome Institute, a DOE Office of Science User Facility, is …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific community as a … and readiness to begin work, checking such factors as genome size, polymorphism level, sample quality and …
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A Complex Confection Decoded: Sugarcane Reference Genome
… was the last major crop without a reference quality genome and now crop researchers can work toward advancing … most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … bioeconomy. Researchers and farmers could improve future sugarcane varieties so that they can adapt to future …
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Webinar: MycoCosm Tutorial
… data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. … on video) 4.  Q: Will it support custom columns in the future? For other things than assembly size or gene count? … but we are open to a dialogue about a possible rationale. 8.  Q: Is there any way to get the most recent tree deployed …
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JGI@25: The Little Alga That Could
… of those shared by both humans and flowering plants). Its genome also contains hundreds of genes uniquely associated … (Hear more from on Chlamy from Sabeeha Merchant in this episode of JGIotas, a Genome Insider podcast minisode.) Since the JGI’s early sequencing …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… So a few years ago, when they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes are the story behind that giant assembly from Lake … In this episode: the software evolution that made metagenome assemblies like this possible. …
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Single Cell Research Group
… Anomaly” first described by Stanley and Konopa in 1985, which highlights our skewed understanding of microbial … in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to … relationships and to provide valuable reference genomes in under-populated areas of the tree of life, as …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… I was introduced into what a government lab and what this future could look like. Edward Lu : I think this internship is gonna help me in the future because it just showed me when people have a goal and … bioformatics, so that’s what I’m gonna take with me to the future.  Shari Larsen : I didn’t grow up with computers, and …
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Special Initiatives & Programs
… science.  Projects include de novo generation of genome data, assistance in interpreting and/or building on …
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Open Frameworks Training the Next Generation of Scientists
… involving academic faculty and researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User … genomics. Fungi can be better understood through reference genomes, but unfortunately there are not many available to … grew from a  modularized training program with the aim for future researchers to develop readily applicable skills and …
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Boosting Small Molecule Production in Super “Soup”
… Program at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … the first time CRISPR-Cas9 had been used to modify a cell’s genome in order to create lysates with altered metabolic … fact in the field whatsoever.” Focusing on Carbon Flux and Future Directions The team reported producing BDO at the …
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