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Boosting Small Molecule Production in Super “Soup”
Program at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … the first time CRISPR-Cas9 had been used to modify a cell’s genome in order to create lysates with altered metabolic … fact in the field whatsoever.” Focusing on Carbon Flux and Future Directions The team reported producing BDO at the …
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User Advisory Committees
All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … and strategic objectives of the microbial and metagenome programs. The committee serves as the program's key …
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JGI@25: Using Team Science to Build Communities Around Data
The 1KFG project represents affiliations at over 180 organizations in 29 U.S. states and 35 countries. … (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … Tree of Life … Fungal Dataset … Plant Datasets … Genome Insider …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located … Berkeley National Laboratory. The JGI consists of around 280 researchers and support staff in the Integrative Genomics …
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Fungus Fuels Tree Growth
… partnered with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Interfaces program at the Oak Ridge National Laboratory (ORNL) sponsored by the Office of Biological and … United States National Science Foundation (NSF) (DEB 1737898 to G. Bonito), the Laboratory of Excellence Advanced …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … for selection to improve biofuel yield through a changing future. Switchgrass has multiple naturally occurring ploidy … (4X or four copies of the genome) and octoploids (8X or eight copies of the genome). Lovell et al. focused on …
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Single Cell Research Group
Anomaly” first described by Stanley and Konopa in 1985, which highlights our skewed understanding of microbial … in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to … relationships and to provide valuable reference genomes in under-populated areas of the tree of life, as …
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Programs & Platform Leads
As an Integrative Genome Science User Facility, the JGI plays a leadership … the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, and DNA …
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Tour the IGB
Take a virtual tour of the IGB, home of the DOE Joint Genome Institute. To navigate virtual tours of each floor, …
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Making a Lichen Together
For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better … Yet the team found none. Instead, the partners stubbornly maintained complete autonomy; they can be isolated and … work was supported by an intramural seed grant (IGSP 2008001) to DA, FL, and FD from the Duke Institute of Genomic …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
Biotechnology and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Berkeley National Laboratory (Berkeley Lab), generated genome sequences for nearly 600 green millet plants and … were generated, though the final analyses focused on 598 individuals. Schmutz and his team assembled and annotated …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
So a few years ago, when they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes are the story behind that giant assembly from Lake … In this episode: the software evolution that made metagenome assemblies like this possible. …
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