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Comparison between Ribosomal Assembly and Machine Learning Tools for Microbial Identification of Organisms with Different Characteristics
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Ian Blaby
… Joint Genome Institute, where he leads three groups focused on HTP DNA design and assembly, strain engineering and bioinformatic tool development/data analysis for synthetic biology and functional genomics. Prior to joining the JGI, he was a group lead … B.Sc. (HONS) – University of Wales, Cardiff, Genetics Ph.D. – …
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PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens
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NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks
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Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data
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Who We Are
… of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National Laboratory. The JGI consists of 225 researchers and support staff in the … We provide access to large-scale datasets and analysis tools for genomes, metagenomes, and metabolomics through its …
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A Complex Confection Decoded: Sugarcane Reference Genome
… work toward advancing sugarcane biotechnology. The Science Considered the world’s most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the sugarcane cultivar R570 has … Botany (IEB) was supported by the ERDF project “Plants as a Tool for Sustainable Global Development” No. …
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Webinar: MycoCosm Tutorial
… about JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Do you accept … various statistics across genomes (see video on comparative tools) 5.  Q: Is there any programmatic access to the …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… DNA for genome sequencing was no easy task. The traditional way of collecting them is through a method called Multiple Displacement Amplification, and most genomes that were acquired through it were … and researchers achieve their analysis goals. Offering this tool establishes the JGI as a leader in single-cell genomic …
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Tanja Woyke Elected to American Academy of Microbiology
… Congratulations to the JGI’s Tanja Woyke , who has been elected to the American Academy of Microbiology (AAM) ! She is among the 68 new Fellows in the Class of 2020, selected from … the AAM Fellows in this cohort. Go here for the full AAM news release. Woyke is also one of the organizers for the …
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Learning to Look
… expands inovirus diversity. To answer the question, “Where’s Waldo?” readers need to look for a number of … in the  Environmental Genomics group . Training the Search Tool Inoviruses are stealth agents that can enter and exit … applications, most notably, phage display. The search tool Roux and his colleagues developed first worked on a …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… without ever hearing much about the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing …
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